-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_5/scaffold_5_8451935-8774960

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for HiQ_model.g8342.t1
Valid prediction for GlimmerHMM_glimmerT_12593-T1
Valid prediction for pasa_asmbl_44231.p1
Valid prediction for Augustus_model.g8336.t1
Valid prediction for snap_scaffold_5-snap.1663-T1
Valid prediction for GeneMark_model.21379_t
Valid prediction for Augustus_model.g8339.t1
Valid prediction for Augustus_model.g8324.t1
Valid prediction for GlimmerHMM_glimmerT_12585-T1
Valid prediction for snap_scaffold_5-snap.1657-T1
Valid prediction for snap_scaffold_5-snap.1640-T1
Valid prediction for snap_scaffold_5-snap.1655-T1
Valid prediction for CodingQuarry_transcript_52029-T1
Valid prediction for snap_scaffold_5-snap.1659-T1
Valid prediction for GlimmerHMM_glimmerT_12577-T1
Valid prediction for CodingQuarry_transcript_52025-T1
Valid prediction for pasa_asmbl_44226.p1
Valid prediction for Augustus_model.g8333.t1
Valid prediction for snap_scaffold_5-snap.1639-T1
Valid prediction for snap_scaffold_5-snap.1642-T1
Valid prediction for pasa_asmbl_44215.p1
Valid prediction for snap_scaffold_5-snap.1643-T1
Valid prediction for GeneMark_model.21384_t
Valid prediction for snap_scaffold_5-snap.1634-T1
Valid prediction for GlimmerHMM_glimmerT_12574-T1
Valid prediction for snap_scaffold_5-snap.1631-T1
Valid prediction for snap_scaffold_5-snap.1652-T1
Valid prediction for CodingQuarry_transcript_52021-T1
Couldn't classify 198982, 199599
Sorry, prediction pasa_asmbl_44220.p1 fails validation.
(CCA)	 CA	198982-199599	GG	AAG
Valid prediction for GeneMark_model.21394_t
Valid prediction for GeneMark_model.21395_t
Valid prediction for GlimmerHMM_glimmerT_12589-T1
Valid prediction for GlimmerHMM_glimmerT_12578-T1
Valid prediction for snap_scaffold_5-snap.1653-T1
Valid prediction for Augustus_model.g8323.t1
Valid prediction for snap_scaffold_5-snap.1664-T1
Valid prediction for snap_scaffold_5-snap.1649-T1
Valid prediction for HiQ_model.g8351.t1
Valid prediction for GlimmerHMM_glimmerT_12584-T1
Valid prediction for GlimmerHMM_glimmerT_12582-T1
Valid prediction for GlimmerHMM_glimmerT_12583-T1
Valid prediction for snap_scaffold_5-snap.1645-T1
Valid prediction for GlimmerHMM_glimmerT_12586-T1
Couldn't classify 214803, 214848
Sorry, prediction pasa_asmbl_44223.p1 fails validation.
(AGA)	 AC	214803-214848	GT	AGG
(GCA)	 AG	215031-215068	GT	AGG
(ATG)	 AG	215518-215597	GT	AAG
(GGC)	 AG	217349-217393	GT	AGG
(ACG)	 AG	218265-218309	GT	AAG
(AGC)	 AG	218699-218742	GT	AGG
(GTT)	 AG	218826-218912	GT	AGG
(AGA)	 AG	221391-221476	GT	TGG
(GAG)	 AG	221616-221736	GT	AGG
(GTG)	 AG	221871-221965	GT	AGG
(GGC)	 AG	222324-222444	GT	CGG
(CTT)	 AG	222973-223061	GT	AGG
(GTT)	 AG	223638-223727	AG	AGA
-recovered pasa_asmbl_44223.p1, initial, 215518, 215597
add_exon() Sorry, pasa_asmbl_44223.p1 221616-221736-terminal-3 is invalid.
-recovered pasa_asmbl_44223.p1, terminal, 221616, 221736
-recovered pasa_asmbl_44223.p1, terminal, 223638, 223727
-recovered pasa_asmbl_44223.p1, internal, 215031, 215068
-recovered pasa_asmbl_44223.p1, internal, 215518, 215597
-recovered pasa_asmbl_44223.p1, internal, 217349, 217393
-recovered pasa_asmbl_44223.p1, internal, 218265, 218309
-recovered pasa_asmbl_44223.p1, internal, 218699, 218742
-recovered pasa_asmbl_44223.p1, internal, 218826, 218912
-recovered pasa_asmbl_44223.p1, internal, 221391, 221476
-recovered pasa_asmbl_44223.p1, internal, 221616, 221736
-recovered pasa_asmbl_44223.p1, internal, 221871, 221965
-recovered pasa_asmbl_44223.p1, internal, 222324, 222444
-recovered pasa_asmbl_44223.p1, internal, 222973, 223061
Valid prediction for Augustus_model.g8346.t1
Valid prediction for Augustus_model.g8337.t1
Valid prediction for CodingQuarry_transcript_52024-T1
Valid prediction for HiQ_model.g8350.t1
Couldn't classify 84718, 84857
Sorry, prediction pasa_asmbl_44213.p1 fails validation.
(GTG)	 AC	84718-84857	GT	AGG
(AGT)	 AG	85165-85235	GT	TGG
(GCC)	 AG	85337-85438	GT	GGG
(ATT)	 AG	85552-85691	CA	GAC
-recovered pasa_asmbl_44213.p1, terminal, 85552, 85691
-recovered pasa_asmbl_44213.p1, internal, 85165, 85235
-recovered pasa_asmbl_44213.p1, internal, 85337, 85438
Valid prediction for snap_scaffold_5-snap.1674-T1
Couldn't classify 105106, 105239
Sorry, prediction pasa_asmbl_44214.p1 fails validation.
(CAG)	 TG	105106-105239	GT	AGG
(GTG)	 AG	105338-105392	GT	AGG
(CCA)	 AG	105587-105679	GT	AGG
(GGT)	 AG	105890-106024	GT	AAG
(GTT)	 AG	106166-106267	GT	AGG
(GGG)	 AG	106464-106619	GT	CGG
(AGT)	 AG	106819-106941	GT	GAG
-recovered pasa_asmbl_44214.p1, terminal, 106819, 106941
-recovered pasa_asmbl_44214.p1, internal, 105338, 105392
-recovered pasa_asmbl_44214.p1, internal, 105587, 105679
-recovered pasa_asmbl_44214.p1, internal, 105890, 106024
-recovered pasa_asmbl_44214.p1, internal, 106166, 106267
-recovered pasa_asmbl_44214.p1, internal, 106464, 106619
-recovered pasa_asmbl_44214.p1, internal, 106819, 106941
Valid prediction for snap_scaffold_5-snap.1650-T1
Valid prediction for GeneMark_model.21380_t
Valid prediction for Augustus_model.g8334.t1
Valid prediction for snap_scaffold_5-snap.1656-T1
Valid prediction for GlimmerHMM_glimmerT_12572-T1
Valid prediction for Augustus_model.g8340.t1
Valid prediction for Augustus_model.g8335.t1
Valid prediction for GlimmerHMM_glimmerT_12581-T1
Valid prediction for snap_scaffold_5-snap.1638-T1
Valid prediction for GeneMark_model.21389_t
Valid prediction for CodingQuarry_transcript_52022-T1
Valid prediction for Augustus_model.g8326.t1
Valid prediction for Augustus_model.g8331.t1
Valid prediction for GeneMark_model.21385_t
Valid prediction for snap_scaffold_5-snap.1644-T1
Valid prediction for CodingQuarry_transcript_52030-T1
Valid prediction for snap_scaffold_5-snap.1679-T1
Valid prediction for GeneMark_model.21378_t
Valid prediction for Augustus_model.g8325.t1
Valid prediction for Augustus_model.g8332.t1
Valid prediction for snap_scaffold_5-snap.1668-T1
Valid prediction for snap_scaffold_5-snap.1658-T1
Valid prediction for GeneMark_model.21387_t
Valid prediction for GlimmerHMM_glimmerT_12580-T1
Valid prediction for GlimmerHMM_glimmerT_12573-T1
Valid prediction for GeneMark_model.21404_t
Valid prediction for Augustus_model.g8327.t1
Valid prediction for Augustus_model.g8338.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_5-snap.1636-T1
Valid prediction for snap_scaffold_5-snap.1683-T1
Valid prediction for snap_scaffold_5-snap.1654-T1
Couldn't classify 38760, 38904
Sorry, prediction pasa_asmbl_45612.p1 fails validation.
(CAG)	 TG	38760-38904	GT	AGG
(AGA)	 AG	39065-39175	GT	AGG
(GGC)	 AG	39324-39417	GT	AGG
(GTT)	 AG	39568-39706	GT	AGG
(GTG)	 AG	39878-40075	TG	AGT
add_exon() Sorry, pasa_asmbl_45612.p1 39324-39417-terminal-3 is invalid.
-recovered pasa_asmbl_45612.p1, terminal, 39324, 39417
-recovered pasa_asmbl_45612.p1, terminal, 39878, 40075
-recovered pasa_asmbl_45612.p1, internal, 39065, 39175
-recovered pasa_asmbl_45612.p1, internal, 39324, 39417
-recovered pasa_asmbl_45612.p1, internal, 39568, 39706
Valid prediction for Augustus_model.g8349.t1
Valid prediction for CodingQuarry_transcript_52017-T1
Valid prediction for snap_scaffold_5-snap.1678-T1
Valid prediction for GlimmerHMM_glimmerT_12571-T1
Valid prediction for Augustus_model.g8319.t1
Valid prediction for snap_scaffold_5-snap.1677-T1
Valid prediction for GeneMark_model.21391_t
Valid prediction for GeneMark_model.21386_t
Valid prediction for pasa_asmbl_45603.p1
Valid prediction for GeneMark_model.21399_t
Valid prediction for GlimmerHMM_glimmerT_12590-T1
Valid prediction for CodingQuarry_transcript_52016-T1
Valid prediction for GeneMark_model.21393_t
Valid prediction for snap_scaffold_5-snap.1633-T1
Valid prediction for GeneMark_model.21405_t
Valid prediction for CodingQuarry_transcript_52019-T1
Valid prediction for GeneMark_model.21390_t
Valid prediction for Augustus_model.g8321.t1
Valid prediction for GeneMark_model.21406_t
Valid prediction for Augustus_model.g8320.t1
Valid prediction for CodingQuarry_transcript_52027-T1
Valid prediction for snap_scaffold_5-snap.1647-T1
Valid prediction for Augustus_model.g8318.t1
Valid prediction for Augustus_model.g8343.t1
Valid prediction for pasa_asmbl_45616.p1
Valid prediction for HiQ_model.g8347.t1
Valid prediction for GlimmerHMM_glimmerT_12597-T1
Valid prediction for pasa_asmbl_45615.p1
Couldn't classify 93880, 93931
Sorry, prediction pasa_asmbl_45606.p1 fails validation.
(ACC)	 TG	93880-93931	GT	AAG
(CAT)	 AG	94055-94186	GC	AGG
(AGT)	 AG	94288-94416	GT	GAG
(CAT)	 AG	94535-94663	GT	GGG
(GCT)	 AG	94768-94896	GT	AGG
(TAT)	 AG	94983-95111	GT	TGG
(CCT)	 AG	95195-95323	GT	GAG
(AAT)	 AG	95428-95556	GT	AAG
(GTT)	 AG	95676-95804	GT	GGG
(GAG)	 AG	95891-95967	CA	AGC
-recovered pasa_asmbl_45606.p1, terminal, 95891, 95967
-recovered pasa_asmbl_45606.p1, internal, 94055, 94186
-recovered pasa_asmbl_45606.p1, internal, 94288, 94416
-recovered pasa_asmbl_45606.p1, internal, 94535, 94663
-recovered pasa_asmbl_45606.p1, internal, 94768, 94896
-recovered pasa_asmbl_45606.p1, internal, 94983, 95111
-recovered pasa_asmbl_45606.p1, internal, 95195, 95323
-recovered pasa_asmbl_45606.p1, internal, 95428, 95556
-recovered pasa_asmbl_45606.p1, internal, 95676, 95804
Valid prediction for GeneMark_model.21398_t
Valid prediction for snap_scaffold_5-snap.1669-T1
Valid prediction for CodingQuarry_transcript_52020-T1
Valid prediction for GeneMark_model.21383_t
Valid prediction for snap_scaffold_5-snap.1675-T1
Valid prediction for GeneMark_model.21376_t
Valid prediction for snap_scaffold_5-snap.1661-T1
Valid prediction for GeneMark_model.21407_t
Valid prediction for GeneMark_model.21403_t
Valid prediction for snap_scaffold_5-snap.1672-T1
Valid prediction for Augustus_model.g8341.t1
Couldn't classify 91291, 91422
Sorry, prediction pasa_asmbl_46318.p2 fails validation.
(ATG)	 GA	90785-90859	GT	GGG
(TGT)	 AG	91038-91166	GT	AGG
(CAT)	 AG	91291-91422	GT	AAG
-recovered pasa_asmbl_46318.p2, initial, 90785, 90859
-recovered pasa_asmbl_46318.p2, internal, 91038, 91166
-recovered pasa_asmbl_46318.p2, internal, 91291, 91422
Valid prediction for pasa_asmbl_45623.p1
Valid prediction for snap_scaffold_5-snap.1682-T1
Valid prediction for GeneMark_model.21388_t
Valid prediction for GlimmerHMM_glimmerT_12591-T1
Valid prediction for snap_scaffold_5-snap.1648-T1
Valid prediction for snap_scaffold_5-snap.1635-T1
Valid prediction for GeneMark_model.21381_t
Valid prediction for CodingQuarry_transcript_52033-T1
Valid prediction for HiQ_model.g8352.t1
Valid prediction for GeneMark_model.21382_t
Valid prediction for HiQ_model.g8330.t1
Valid prediction for snap_scaffold_5-snap.1671-T1
Valid prediction for snap_scaffold_5-snap.1646-T1
Valid prediction for GlimmerHMM_glimmerT_12599-T1
Valid prediction for GlimmerHMM_glimmerT_12579-T1
Valid prediction for snap_scaffold_5-snap.1673-T1
Valid prediction for snap_scaffold_5-snap.1681-T1
Valid prediction for GeneMark_model.21401_t
Valid prediction for snap_scaffold_5-snap.1637-T1
Valid prediction for CodingQuarry_transcript_52026-T1
Valid prediction for snap_scaffold_5-snap.1662-T1
Valid prediction for GlimmerHMM_glimmerT_12575-T1
Valid prediction for snap_scaffold_5-snap.1660-T1
Valid prediction for GlimmerHMM_glimmerT_12576-T1
Valid prediction for CodingQuarry_transcript_52028-T1
Valid prediction for snap_scaffold_5-snap.1632-T1
Couldn't classify 12361, 13737
Sorry, prediction pasa_asmbl_45617.p1 fails validation.
(TTG)	 CC	12361-13737	CT	GAC
Valid prediction for snap_scaffold_5-snap.1676-T1
Valid prediction for pasa_asmbl_45598.p1
Valid prediction for GlimmerHMM_glimmerT_12588-T1
Valid prediction for GlimmerHMM_glimmerT_12594-T1
Valid prediction for GlimmerHMM_glimmerT_12595-T1
Valid prediction for GlimmerHMM_glimmerT_12592-T1
Valid prediction for GeneMark_model.21375_t
Valid prediction for CodingQuarry_transcript_52018-T1
Valid prediction for snap_scaffold_5-snap.1680-T1
Valid prediction for CodingQuarry_transcript_52015-T1
Valid prediction for GlimmerHMM_glimmerT_12587-T1
Valid prediction for HiQ_model.g8353.t1
Valid prediction for GeneMark_model.21402_t
Valid prediction for snap_scaffold_5-snap.1667-T1
Valid prediction for Augustus_model.g8322.t1
Valid prediction for Augustus_model.g8348.t1
Valid prediction for Augustus_model.g8355.t1
Valid prediction for GeneMark_model.21377_t
Valid prediction for GlimmerHMM_glimmerT_12596-T1
Valid prediction for GeneMark_model.21400_t
Valid prediction for GeneMark_model.21397_t
Valid prediction for Augustus_model.g8344.t1
Valid prediction for GlimmerHMM_glimmerT_12598-T1
Valid prediction for pasa_asmbl_45605.p1
Couldn't classify 10253, 10411
Couldn't classify 11612, 11887
Sorry, prediction pasa_asmbl_45618.p1 fails validation.
(GCT)	 AG	10253-10411	GT	AGG
(GTT)	 AG	11612-11887	GT	AGG
-recovered pasa_asmbl_45618.p1, internal, 10253, 10411
-recovered pasa_asmbl_45618.p1, internal, 11612, 11887
Valid prediction for Augustus_model.g8354.t1
Valid prediction for snap_scaffold_5-snap.1670-T1
Valid prediction for CodingQuarry_transcript_52031-T1
Valid prediction for snap_scaffold_5-snap.1641-T1
Valid prediction for GeneMark_model.21374_t
Couldn't classify 85892, 85958
Couldn't classify 86974, 86996
Sorry, prediction pasa_asmbl_46363.p1 fails validation.
(GGA)	 TC	85892-85958	GT	AGG
(ACA)	 AG	86165-86287	GT	CCG
(GTA)	 AG	86442-86579	GT	GGG
(ACT)	 AG	86715-86837	GT	TGG
(ATG)	 AG	86974-86996	AA	ACA
-recovered pasa_asmbl_46363.p1, internal, 86165, 86287
-recovered pasa_asmbl_46363.p1, internal, 86442, 86579
-recovered pasa_asmbl_46363.p1, internal, 86715, 86837
Valid prediction for Augustus_model.g8345.t1
Valid prediction for snap_scaffold_5-snap.1651-T1
Valid prediction for snap_scaffold_5-snap.1666-T1
Valid prediction for GeneMark_model.21396_t
Valid prediction for HiQ_model.g8328.t1
Valid prediction for HiQ_model.g8329.t1
Valid prediction for snap_scaffold_5-snap.1665-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7313, rend_intergenic: 5628  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20807, rend_intergenic: 14283  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85691, rend_intergenic: 79310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152614, rend_intergenic: 148801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199599, rend_intergenic: 198446  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 245039, rend_intergenic: 244305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 323026
-exon list size: 648


building trellis

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49.2    
49.4    
49.5    
49.7    
49.8    
50.0    
50.2    
50.3    
50.5    
50.6    
50.8    
50.9    
51.1    
51.2    
51.4    
51.5    
51.7    
51.8    
52.0    
52.2    
52.3    
52.5    
52.6    
52.8    
52.9    
53.1    
53.2    
53.4    
53.5    
53.7    
53.8    
54.0    
54.2    
54.3    
54.5    
54.6    
54.8    
54.9    
55.1    
55.2    
55.4    
55.5    
55.7    
55.8    
56.0    
56.2    
56.3    
56.5    
56.6    
56.8    
56.9    
57.1    
57.2    
57.4    
57.5    
57.7    
57.8    
58.0    
58.2    
58.3    
58.5    
58.6    
58.8    
58.9    
59.1    
59.2    
59.4    
59.5    
59.7    
59.8    
60.0    
60.2    
60.3    
60.5    
60.6    
60.8    
60.9    
61.1    
61.2    
61.4    
61.5    
61.7    
61.8    
62.0    
62.2    
62.3    
62.5    
62.6    
62.8    
62.9    
63.1    
63.2    
63.4    
63.5    
63.7    
63.8    
64.0    
64.2    
64.3    
64.5    
64.6    
64.8    
64.9    
65.1    
65.2    
65.4    
65.5    
65.7    
65.8    
66.0    
66.2    
66.3    
66.5    
66.6    
66.8    
66.9    
67.1    
67.2    
67.4    
67.5    
67.7    
67.8    
68.0    
68.2    
68.3    
68.5    
68.6    
68.8    
68.9    
69.1    
69.2    
69.4    
69.5    
69.7    
69.8    
70.0    
70.2    
70.3    
70.5    
70.6    
70.8    
70.9    
71.1    
71.2    
71.4    
71.5    
71.7    
71.8    
72.0    
72.2    
72.3    
72.5    
72.6    
72.8    
72.9    
73.1    
73.2    
73.4    
73.5    
73.7    
73.8    
74.0    
74.2    
74.3    
74.5    
74.6    
74.8    
74.9    
75.1    
75.2    
75.4    
75.5    
75.7    
75.8    
76.0    
76.2    
76.3    
76.5    
76.6    
76.8    
76.9    
77.1    
77.2    
77.4    
77.5    
77.7    
77.8    
78.0    
78.2    
78.3    
78.5    
78.6    
78.8    
78.9    
79.1    
79.2    
79.4    
79.5    
79.7    
79.8    
80.0    
80.2    
80.3    
80.5    
80.6    
80.8    
80.9    
81.1    
81.2    
81.4    
81.5    
81.7    
81.8    
82.0    
82.2    
82.3    
82.5    
82.6    
82.8    
82.9    
83.1    
83.2    
83.4    
83.5    
83.7    
83.8    
84.0    
84.2    
84.3    
84.5    
84.6    
84.8    
84.9    
85.1    
85.2    
85.4    
85.5    
85.7    
85.8    
86.0    
86.2    
86.3    
86.5    
86.6    
86.8    
86.9    
87.1    
87.2    
87.4    
87.5    
87.7    
87.8    
88.0    
88.2    
88.3    
88.5    
88.6    
88.8    
88.9    
89.1    
89.2    
89.4    
89.5    
89.7    
89.8    
90.0    
90.2    
90.3    
90.5    
90.6    
90.8    
90.9    
91.1    
91.2    
91.4    
91.5    
91.7    
91.8    
92.0    
92.2    
92.3    
92.5    
92.6    
92.8    
92.9    
93.1    
93.2    
93.4    
93.5    
93.7    
93.8    
94.0    
94.2    
94.3    
94.5    
94.6    
94.8    
94.9    
95.1    
95.2    
95.4    
95.5    
95.7    
95.8    
96.0    
96.2    
96.3    
96.5    
96.6    
96.8    
96.9    
97.1    
97.2    
97.4    
97.5    
97.7    
97.8    
98.0    
98.2    
98.3    
98.5    
98.6    
98.8    
98.9    
99.1    
99.2    
99.4    
99.5    
99.7    
99.8    
-found 45 predictions from path traversal
Error with prediction: snap lend_intergenic: 7313, rend_intergenic: 5628  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20807, rend_intergenic: 14283  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85691, rend_intergenic: 79310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152614, rend_intergenic: 148801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199599, rend_intergenic: 198446  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 245039, rend_intergenic: 244305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 40 predictions persist after filtering for low support