-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_5/scaffold_5_7221114-7466929

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_12454-T1
Valid prediction for snap_scaffold_5-snap.1491-T1
Valid prediction for snap_scaffold_5-snap.1453-T1
Valid prediction for GlimmerHMM_glimmerT_12442-T1
Valid prediction for snap_scaffold_5-snap.1475-T1
Valid prediction for CodingQuarry_transcript_51992-T1
Valid prediction for snap_scaffold_5-snap.1456-T1
Valid prediction for GeneMark_model.21191_t
Valid prediction for Augustus_model.g8235.t1
Valid prediction for GeneMark_model.21156_t
Valid prediction for GeneMark_model.21157_t
Couldn't classify 95372, 95695
Sorry, prediction pasa_asmbl_44152.p1 fails validation.
(GAG)	 GG	95372-95695	GT	GGG
(GAT)	 AG	96708-96837	GT	AAG
(GTG)	 AG	97027-97090	GT	TAG
(TGA)	 AG	97238-97391	GT	CAG
(CTG)	 AG	97494-97632	GT	TGG
(GTA)	 AG	98964-99238	GG	GAG
-recovered pasa_asmbl_44152.p1, terminal, 98964, 99238
-recovered pasa_asmbl_44152.p1, internal, 96708, 96837
-recovered pasa_asmbl_44152.p1, internal, 97027, 97090
-recovered pasa_asmbl_44152.p1, internal, 97238, 97391
-recovered pasa_asmbl_44152.p1, internal, 97494, 97632
Valid prediction for snap_scaffold_5-snap.1457-T1
Valid prediction for GeneMark_model.21154_t
Valid prediction for snap_scaffold_5-snap.1471-T1
Valid prediction for snap_scaffold_5-snap.1480-T1
Valid prediction for GeneMark_model.21185_t
Valid prediction for pasa_asmbl_44161.p1
Couldn't classify 40619, 40777
Couldn't classify 41580, 41762
Sorry, prediction pasa_asmbl_45133.p1 fails validation.
(AAC)	 GG	40619-40777	GT	AGG
(GTG)	 AG	41580-41762	TC	AGT
Valid prediction for GlimmerHMM_glimmerT_12443-T1
Valid prediction for GeneMark_model.21163_t
Valid prediction for GeneMark_model.21179_t
Valid prediction for GlimmerHMM_glimmerT_12435-T1
Valid prediction for GeneMark_model.21190_t
Valid prediction for GlimmerHMM_glimmerT_12426-T1
Valid prediction for GlimmerHMM_glimmerT_12428-T1
Valid prediction for HiQ_model.g8232.t1
Valid prediction for GeneMark_model.21164_t
Valid prediction for snap_scaffold_5-snap.1488-T1
Valid prediction for Augustus_model.g8227.t1
Valid prediction for GeneMark_model.21175_t
Valid prediction for GeneMark_model.21172_t
Valid prediction for snap_scaffold_5-snap.1464-T1
Valid prediction for GeneMark_model.21203_t
Valid prediction for GeneMark_model.21181_t
Valid prediction for GlimmerHMM_glimmerT_12433-T1
Valid prediction for HiQ_model.g8247.t1
Valid prediction for snap_scaffold_5-snap.1482-T1
Valid prediction for snap_scaffold_5-snap.1494-T1
Valid prediction for Augustus_model.g8234.t1
Valid prediction for HiQ_model.g8236.t1
Valid prediction for Augustus_model.g8231.t1
Valid prediction for Augustus_model.g8233.t1
Valid prediction for snap_scaffold_5-snap.1452-T1
Valid prediction for GeneMark_model.21196_t
Valid prediction for GlimmerHMM_glimmerT_12437-T1
Valid prediction for snap_scaffold_5-snap.1472-T1
Valid prediction for snap_scaffold_5-snap.1486-T1
Valid prediction for HiQ_model.g8244.t1
Valid prediction for GeneMark_model.21151_t
Valid prediction for GlimmerHMM_glimmerT_12429-T1
Valid prediction for GeneMark_model.21159_t
Valid prediction for GeneMark_model.21161_t
Valid prediction for Augustus_model.g8239.t1
Valid prediction for GlimmerHMM_glimmerT_12439-T1
Valid prediction for snap_scaffold_5-snap.1468-T1
Valid prediction for GeneMark_model.21198_t
Valid prediction for Augustus_model.g8230.t1
Valid prediction for GlimmerHMM_glimmerT_12434-T1
Valid prediction for GeneMark_model.21160_t
Valid prediction for Augustus_model.g8228.t1
Valid prediction for Augustus_model.g8238.t1
Valid prediction for GlimmerHMM_glimmerT_12425-T1
Valid prediction for CodingQuarry_transcript_51995-T1
Valid prediction for snap_scaffold_5-snap.1495-T1
Valid prediction for snap_scaffold_5-snap.1473-T1
Valid prediction for CodingQuarry_transcript_51991-T1
Couldn't classify 92864, 92935
Couldn't classify 95052, 95161
Sorry, prediction pasa_asmbl_44146.p1 fails validation.
(ACC)	 CC	92864-92935	GT	AGG
(AGC)	 AG	94259-94426	GT	AGG
(TTC)	 AG	94576-94659	GT	GGG
(CAG)	 AG	94750-94933	GC	AGG
(GTC)	 AG	95052-95161	GG	GGG
-recovered pasa_asmbl_44146.p1, internal, 94259, 94426
-recovered pasa_asmbl_44146.p1, internal, 94576, 94659
-recovered pasa_asmbl_44146.p1, internal, 94750, 94933
Valid prediction for GeneMark_model.21166_t
Valid prediction for GeneMark_model.21184_t
Valid prediction for pasa_asmbl_44159.p1
Valid prediction for snap_scaffold_5-snap.1467-T1
Valid prediction for snap_scaffold_5-snap.1477-T1
Valid prediction for GeneMark_model.21150_t
Valid prediction for CodingQuarry_transcript_51988-T1
Valid prediction for snap_scaffold_5-snap.1460-T1
Valid prediction for GeneMark_model.21171_t
Valid prediction for GlimmerHMM_glimmerT_12444-T1
Valid prediction for snap_scaffold_5-snap.1462-T1
Valid prediction for GeneMark_model.21187_t
Valid prediction for GlimmerHMM_glimmerT_12455-T1
Valid prediction for GeneMark_model.21189_t
Valid prediction for GlimmerHMM_glimmerT_12438-T1
Valid prediction for GlimmerHMM_glimmerT_12451-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 198279, 198387
Couldn't classify 199044, 199100
Couldn't classify 199264, 199418
Sorry, prediction pasa_asmbl_45552.p1 fails validation.
(CAG)	 TT	198279-198387	GT	TGG
(ATG)	 AG	198488-198584	GT	ACG
(GAA)	 AG	198785-198930	GT	TGG
(ATG)	 AG	199044-199100	AT	CTA
(CTG)	 AC	199264-199418	GT	AGG
(GAG)	 AG	199507-199653	GT	AGG
(GTG)	 AG	199762-199833	GT	AGG
(TTC)	 AG	200440-200448	AG	GAA
add_exon() Sorry, pasa_asmbl_45552.p1 198488-198584-initial-1 is invalid.
-recovered pasa_asmbl_45552.p1, initial, 198488, 198584
-recovered pasa_asmbl_45552.p1, terminal, 200440, 200448
-recovered pasa_asmbl_45552.p1, internal, 198488, 198584
-recovered pasa_asmbl_45552.p1, internal, 198785, 198930
-recovered pasa_asmbl_45552.p1, internal, 199507, 199653
-recovered pasa_asmbl_45552.p1, internal, 199762, 199833
Valid prediction for snap_scaffold_5-snap.1459-T1
Valid prediction for snap_scaffold_5-snap.1490-T1
Valid prediction for GeneMark_model.21170_t
Valid prediction for CodingQuarry_transcript_51996-T1
Valid prediction for GeneMark_model.21162_t
Valid prediction for GeneMark_model.21167_t
Couldn't classify 103014, 103117
Couldn't classify 103188, 103266
Sorry, prediction CodingQuarry_transcript_51989-T1 fails validation.
(ATG)	 TC	103014-103117	CT	ACC
(CTC)	 AC	103188-103266	TC	GAT
Valid prediction for GlimmerHMM_glimmerT_12452-T1
Valid prediction for snap_scaffold_5-snap.1458-T1
Valid prediction for GeneMark_model.21202_t
Valid prediction for GeneMark_model.21174_t
Valid prediction for GlimmerHMM_glimmerT_12458-T1
Valid prediction for CodingQuarry_transcript_51990-T1
Couldn't classify 88752, 88857
Sorry, prediction pasa_asmbl_45555.p1 fails validation.
(GTG)	 GA	88752-88857	GT	CGG
(GAG)	 AG	90422-90616	GT	AGG
(GTG)	 AG	90774-90916	GT	AGG
(TAC)	 AG	91279-91386	GT	AGG
(GTG)	 AG	91584-91688	GT	CTG
(GCT)	 AG	92332-92494	GT	AAG
(ACA)	 AG	93179-93312	GT	AGG
(GTG)	 AG	93426-93574	GT	GGG
(GAA)	 AG	93927-94083	GT	AGG
(GAT)	 AG	94832-94990	GT	GAG
add_exon() Sorry, pasa_asmbl_45555.p1 90422-90616-terminal-1 is invalid.
-recovered pasa_asmbl_45555.p1, terminal, 90422, 90616
-recovered pasa_asmbl_45555.p1, terminal, 94832, 94990
-recovered pasa_asmbl_45555.p1, internal, 90422, 90616
-recovered pasa_asmbl_45555.p1, internal, 90774, 90916
-recovered pasa_asmbl_45555.p1, internal, 91279, 91386
-recovered pasa_asmbl_45555.p1, internal, 91584, 91688
-recovered pasa_asmbl_45555.p1, internal, 92332, 92494
-recovered pasa_asmbl_45555.p1, internal, 93179, 93312
-recovered pasa_asmbl_45555.p1, internal, 93426, 93574
-recovered pasa_asmbl_45555.p1, internal, 93927, 94083
-recovered pasa_asmbl_45555.p1, internal, 94832, 94990
Valid prediction for snap_scaffold_5-snap.1463-T1
Valid prediction for GeneMark_model.21176_t
Valid prediction for GeneMark_model.21193_t
Valid prediction for GlimmerHMM_glimmerT_12445-T1
Valid prediction for HiQ_model.g8250.t1
Valid prediction for GlimmerHMM_glimmerT_12447-T1
Valid prediction for GeneMark_model.21201_t
Valid prediction for snap_scaffold_5-snap.1454-T1
Valid prediction for GeneMark_model.21186_t
Couldn't classify 38479, 38592
Sorry, prediction pasa_asmbl_46344.p1 fails validation.
(GCC)	 CA	38479-38592	GT	AGG
(ATG)	 AG	38727-38835	GT	AGG
(ATC)	 AG	38925-39010	GT	AGG
(GAG)	 AG	39150-39252	GT	GGG
(GTA)	 AG	39406-39548	GT	AGG
(GTG)	 AG	40190-40289	GT	TGG
(GTG)	 AG	40662-40819	GT	AGG
(ATT)	 AG	40991-41073	GT	AGG
(TAT)	 AG	41438-41585	GG	GAG
-recovered pasa_asmbl_46344.p1, initial, 38727, 38835
-recovered pasa_asmbl_46344.p1, terminal, 41438, 41585
-recovered pasa_asmbl_46344.p1, internal, 38727, 38835
-recovered pasa_asmbl_46344.p1, internal, 38925, 39010
-recovered pasa_asmbl_46344.p1, internal, 39150, 39252
-recovered pasa_asmbl_46344.p1, internal, 39406, 39548
-recovered pasa_asmbl_46344.p1, internal, 40190, 40289
-recovered pasa_asmbl_46344.p1, internal, 40662, 40819
-recovered pasa_asmbl_46344.p1, internal, 40991, 41073
Valid prediction for CodingQuarry_transcript_51993-T1
Valid prediction for snap_scaffold_5-snap.1455-T1
Valid prediction for snap_scaffold_5-snap.1487-T1
Valid prediction for snap_scaffold_5-snap.1489-T1
Valid prediction for snap_scaffold_5-snap.1466-T1
Valid prediction for GeneMark_model.21178_t
Valid prediction for pasa_asmbl_45568.p1
Valid prediction for snap_scaffold_5-snap.1493-T1
Valid prediction for GlimmerHMM_glimmerT_12432-T1
Valid prediction for GeneMark_model.21153_t
Valid prediction for GeneMark_model.21195_t
Valid prediction for snap_scaffold_5-snap.1484-T1
Valid prediction for GeneMark_model.21168_t
Valid prediction for GeneMark_model.21149_t
Valid prediction for GeneMark_model.21183_t
Valid prediction for Augustus_model.g8248.t1
Valid prediction for GeneMark_model.21199_t
Valid prediction for GeneMark_model.21152_t
Valid prediction for snap_scaffold_5-snap.1483-T1
Valid prediction for GlimmerHMM_glimmerT_12427-T1
Valid prediction for GlimmerHMM_glimmerT_12453-T1
Valid prediction for GlimmerHMM_glimmerT_12431-T1
Valid prediction for snap_scaffold_5-snap.1470-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for HiQ_model.g8241.t1
Valid prediction for snap_scaffold_5-snap.1492-T1
Valid prediction for HiQ_model.g8249.t1
Valid prediction for GlimmerHMM_glimmerT_12446-T1
Valid prediction for CodingQuarry_transcript_51997-T1
Valid prediction for GeneMark_model.21165_t
Valid prediction for GeneMark_model.21182_t
Valid prediction for GlimmerHMM_glimmerT_12441-T1
Valid prediction for snap_scaffold_5-snap.1469-T1
Valid prediction for HiQ_model.g8245.t1
Valid prediction for GeneMark_model.21169_t
Valid prediction for GeneMark_model.21155_t
Valid prediction for GlimmerHMM_glimmerT_12450-T1
Couldn't classify 99442, 99480
Sorry, prediction pasa_asmbl_45553.p1 fails validation.
(CCC)	 CC	99442-99480	GT	GGG
(TTG)	 AG	100302-100480	GT	AGG
(GTT)	 AG	100696-100889	GT	AGG
(AGT)	 AG	101153-101218	GT	AGG
(ACC)	 AG	101322-101563	CC	GAC
-recovered pasa_asmbl_45553.p1, terminal, 101322, 101563
-recovered pasa_asmbl_45553.p1, internal, 100302, 100480
-recovered pasa_asmbl_45553.p1, internal, 100696, 100889
-recovered pasa_asmbl_45553.p1, internal, 101153, 101218
Valid prediction for HiQ_model.g8243.t1
Valid prediction for snap_scaffold_5-snap.1478-T1
Valid prediction for GlimmerHMM_glimmerT_12457-T1
Valid prediction for GeneMark_model.21188_t
Valid prediction for Augustus_model.g8242.t1
Valid prediction for GeneMark_model.21200_t
Valid prediction for snap_scaffold_5-snap.1481-T1
Valid prediction for Augustus_model.g8240.t1
Valid prediction for GeneMark_model.21197_t
Valid prediction for GlimmerHMM_glimmerT_12449-T1
Valid prediction for snap_scaffold_5-snap.1474-T1
Valid prediction for GeneMark_model.21204_t
Valid prediction for GeneMark_model.21192_t
Valid prediction for GeneMark_model.21148_t
Valid prediction for GeneMark_model.21180_t
Valid prediction for GlimmerHMM_glimmerT_12440-T1
Valid prediction for snap_scaffold_5-snap.1485-T1
Valid prediction for Augustus_model.g8237.t1
Valid prediction for snap_scaffold_5-snap.1479-T1
Valid prediction for pasa_asmbl_45559.p1
Valid prediction for GlimmerHMM_glimmerT_12456-T1
Valid prediction for snap_scaffold_5-snap.1476-T1
Valid prediction for GeneMark_model.21173_t
Valid prediction for GlimmerHMM_glimmerT_12448-T1
Valid prediction for pasa_asmbl_45557.p1
Valid prediction for GeneMark_model.21158_t
Valid prediction for CodingQuarry_transcript_51994-T1
Valid prediction for snap_scaffold_5-snap.1465-T1
Valid prediction for GlimmerHMM_glimmerT_12430-T1
Valid prediction for snap_scaffold_5-snap.1461-T1
Valid prediction for GeneMark_model.21194_t
Valid prediction for Augustus_model.g8246.t1
Valid prediction for Augustus_model.g8229.t1
Couldn't classify 50335, 50384
Couldn't classify 51590, 51629
Sorry, prediction pasa_asmbl_45563.p1 fails validation.
(GAG)	 CC	50335-50384	GT	AGG
(GTT)	 AG	50732-50859	GT	AGG
(GGC)	 AG	51051-51171	GT	TGG
(TTT)	 AG	51412-51465	GT	AGG
(TCC)	 AG	51590-51629	AT	TGA
-recovered pasa_asmbl_45563.p1, internal, 50732, 50859
-recovered pasa_asmbl_45563.p1, internal, 51051, 51171
-recovered pasa_asmbl_45563.p1, internal, 51412, 51465
Valid prediction for pasa_asmbl_45556.p1
Valid prediction for GlimmerHMM_glimmerT_12436-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17757, rend_intergenic: 14171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46307, rend_intergenic: 33997  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54356, rend_intergenic: 49730  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60542, rend_intergenic: 55666  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70909, rend_intergenic: 61719  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83763, rend_intergenic: 73887  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94001, rend_intergenic: 84512  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99238, rend_intergenic: 94717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103665, rend_intergenic: 102769  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105334, rend_intergenic: 105326  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108639, rend_intergenic: 105488  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147552, rend_intergenic: 145619  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152439, rend_intergenic: 148186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 245816
-exon list size: 722


building trellis

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42.3    
42.4    
42.5    
42.7    
42.8    
43.0    
43.1    
43.2    
43.4    
43.5    
43.6    
43.8    
43.9    
44.1    
44.2    
44.3    
44.5    
44.6    
44.8    
44.9    
45.0    
45.2    
45.3    
45.4    
45.6    
45.7    
45.9    
46.0    
46.1    
46.3    
46.4    
46.5    
46.7    
46.8    
47.0    
47.1    
47.2    
47.4    
47.5    
47.7    
47.8    
47.9    
48.1    
48.2    
48.3    
48.5    
48.6    
48.8    
48.9    
49.0    
49.2    
49.3    
49.4    
49.6    
49.7    
49.9    
50.0    
50.1    
50.3    
50.4    
50.6    
50.7    
50.8    
51.0    
51.1    
51.2    
51.4    
51.5    
51.7    
51.8    
51.9    
52.1    
52.2    
52.3    
52.5    
52.6    
52.8    
52.9    
53.0    
53.2    
53.3    
53.5    
53.6    
53.7    
53.9    
54.0    
54.1    
54.3    
54.4    
54.6    
54.7    
54.8    
55.0    
55.1    
55.2    
55.4    
55.5    
55.7    
55.8    
55.9    
56.1    
56.2    
56.4    
56.5    
56.6    
56.8    
56.9    
57.0    
57.2    
57.3    
57.5    
57.6    
57.7    
57.9    
58.0    
58.1    
58.3    
58.4    
58.6    
58.7    
58.8    
59.0    
59.1    
59.3    
59.4    
59.5    
59.7    
59.8    
59.9    
60.1    
60.2    
60.4    
60.5    
60.6    
60.8    
60.9    
61.0    
61.2    
61.3    
61.5    
61.6    
61.7    
61.9    
62.0    
62.2    
62.3    
62.4    
62.6    
62.7    
62.8    
63.0    
63.1    
63.3    
63.4    
63.5    
63.7    
63.8    
64.0    
64.1    
64.2    
64.4    
64.5    
64.6    
64.8    
64.9    
65.1    
65.2    
65.3    
65.5    
65.6    
65.7    
65.9    
66.0    
66.2    
66.3    
66.4    
66.6    
66.7    
66.9    
67.0    
67.1    
67.3    
67.4    
67.5    
67.7    
67.8    
68.0    
68.1    
68.2    
68.4    
68.5    
68.6    
68.8    
68.9    
69.1    
69.2    
69.3    
69.5    
69.6    
69.8    
69.9    
70.0    
70.2    
70.3    
70.4    
70.6    
70.7    
70.9    
71.0    
71.1    
71.3    
71.4    
71.5    
71.7    
71.8    
72.0    
72.1    
72.2    
72.4    
72.5    
72.7    
72.8    
72.9    
73.1    
73.2    
73.3    
73.5    
73.6    
73.8    
73.9    
74.0    
74.2    
74.3    
74.4    
74.6    
74.7    
74.9    
75.0    
75.1    
75.3    
75.4    
75.6    
75.7    
75.8    
76.0    
76.1    
76.2    
76.4    
76.5    
76.7    
76.8    
76.9    
77.1    
77.2    
77.3    
77.5    
77.6    
77.8    
77.9    
78.0    
78.2    
78.3    
78.5    
78.6    
78.7    
78.9    
79.0    
79.1    
79.3    
79.4    
79.6    
79.7    
79.8    
80.0    
80.1    
80.2    
80.4    
80.5    
80.7    
80.8    
80.9    
81.1    
81.2    
81.4    
81.5    
81.6    
81.8    
81.9    
82.0    
82.2    
82.3    
82.5    
82.6    
82.7    
82.9    
83.0    
83.1    
83.3    
83.4    
83.6    
83.7    
83.8    
84.0    
84.1    
84.3    
84.4    
84.5    
84.7    
84.8    
84.9    
85.1    
85.2    
85.4    
85.5    
85.6    
85.8    
85.9    
86.0    
86.2    
86.3    
86.5    
86.6    
86.7    
86.9    
87.0    
87.2    
87.3    
87.4    
87.6    
87.7    
87.8    
88.0    
88.1    
88.3    
88.4    
88.5    
88.7    
88.8    
89.0    
89.1    
89.2    
89.4    
89.5    
89.6    
89.8    
89.9    
90.1    
90.2    
90.3    
90.5    
90.6    
90.7    
90.9    
91.0    
91.2    
91.3    
91.4    
91.6    
91.7    
91.9    
92.0    
92.1    
92.3    
92.4    
92.5    
92.7    
92.8    
93.0    
93.1    
93.2    
93.4    
93.5    
93.6    
93.8    
93.9    
94.1    
94.2    
94.3    
94.5    
94.6    
94.8    
94.9    
95.0    
95.2    
95.3    
95.4    
95.6    
95.7    
95.9    
96.0    
96.1    
96.3    
96.4    
96.5    
96.7    
96.8    
97.0    
97.1    
97.2    
97.4    
97.5    
97.7    
97.8    
97.9    
98.1    
98.2    
98.3    
98.5    
98.6    
98.8    
98.9    
99.0    
99.2    
99.3    
99.4    
99.6    
99.7    
99.9    
-found 43 predictions from path traversal
Error with prediction: snap lend_intergenic: 17757, rend_intergenic: 14171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46307, rend_intergenic: 33997  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54356, rend_intergenic: 49730  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60542, rend_intergenic: 55666  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70909, rend_intergenic: 61719  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83763, rend_intergenic: 73887  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94001, rend_intergenic: 84512  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99238, rend_intergenic: 94717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103665, rend_intergenic: 102769  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105334, rend_intergenic: 105326  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108639, rend_intergenic: 105488  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147552, rend_intergenic: 145619  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152439, rend_intergenic: 148186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 23 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 228786 - 245816
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 232049 - 245816
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 232132 - 245816
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 232279 - 245816
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 232279 - 245409
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support
	-no exons in range 232279 - 243040