-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_5/scaffold_5_5315936-5554220

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.20676_t
Valid prediction for snap_scaffold_5-snap.1081-T1
Valid prediction for snap_scaffold_5-snap.1078-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_5-snap.1107-T1
Valid prediction for GlimmerHMM_glimmerT_12193-T1
Valid prediction for GeneMark_model.20667_t
Valid prediction for snap_scaffold_5-snap.1072-T1
Valid prediction for snap_scaffold_5-snap.1092-T1
Valid prediction for GeneMark_model.20637_t
Valid prediction for GeneMark_model.20635_t
Valid prediction for GlimmerHMM_glimmerT_12207-T1
Valid prediction for snap_scaffold_5-snap.1069-T1
Valid prediction for GeneMark_model.20632_t
Valid prediction for snap_scaffold_5-snap.1071-T1
Valid prediction for Augustus_model.g8034.t1
Valid prediction for GeneMark_model.20673_t
Valid prediction for snap_scaffold_5-snap.1098-T1
Valid prediction for GeneMark_model.20657_t
Valid prediction for snap_scaffold_5-snap.1088-T1
Valid prediction for snap_scaffold_5-snap.1086-T1
Valid prediction for GeneMark_model.20640_t
Valid prediction for GlimmerHMM_glimmerT_12195-T1
Valid prediction for snap_scaffold_5-snap.1091-T1
Valid prediction for snap_scaffold_5-snap.1104-T1
Valid prediction for Augustus_model.g8031.t1
Valid prediction for snap_scaffold_5-snap.1087-T1
Valid prediction for GeneMark_model.20690_t
Valid prediction for GeneMark_model.20642_t
Valid prediction for GlimmerHMM_glimmerT_12187-T1
Valid prediction for snap_scaffold_5-snap.1075-T1
Valid prediction for snap_scaffold_5-snap.1070-T1
Valid prediction for GeneMark_model.20695_t
Valid prediction for GeneMark_model.20660_t
Valid prediction for GeneMark_model.20651_t
Valid prediction for GeneMark_model.20682_t
Valid prediction for GeneMark_model.20647_t
Couldn't classify 194530, 194571
Sorry, prediction pasa_asmbl_44011.p1 fails validation.
(AAG)	 CC	194530-194571	GT	AGG
(GTC)	 AG	195452-195515	GT	TGG
(ATG)	 AG	195675-195726	GT	CAG
(CTC)	 AG	196055-196118	GT	AGG
(GTG)	 AG	196296-196502	GT	CGG
(GTA)	 AG	196898-196977	GT	TGG
(GAA)	 AG	197078-197156	GT	AGG
(GTT)	 AG	197295-197366	GT	CTG
(AAT)	 AG	197620-197682	GT	AGG
(ATG)	 AG	197811-197951	CT	AGC
-recovered pasa_asmbl_44011.p1, initial, 195675, 195726
-recovered pasa_asmbl_44011.p1, terminal, 197811, 197951
-recovered pasa_asmbl_44011.p1, internal, 195452, 195515
-recovered pasa_asmbl_44011.p1, internal, 195675, 195726
-recovered pasa_asmbl_44011.p1, internal, 196055, 196118
-recovered pasa_asmbl_44011.p1, internal, 196296, 196502
-recovered pasa_asmbl_44011.p1, internal, 196898, 196977
-recovered pasa_asmbl_44011.p1, internal, 197078, 197156
-recovered pasa_asmbl_44011.p1, internal, 197295, 197366
-recovered pasa_asmbl_44011.p1, internal, 197620, 197682
Valid prediction for GeneMark_model.20669_t
Valid prediction for GlimmerHMM_glimmerT_12199-T1
Valid prediction for GeneMark_model.20646_t
Valid prediction for GeneMark_model.20629_t
Valid prediction for GeneMark_model.20677_t
Valid prediction for GeneMark_model.20679_t
Valid prediction for GeneMark_model.20655_t
Valid prediction for GeneMark_model.20653_t
Valid prediction for GlimmerHMM_glimmerT_12186-T1
Valid prediction for snap_scaffold_5-snap.1066-T1
Valid prediction for HiQ_model.g8052.t1
Valid prediction for GlimmerHMM_glimmerT_12197-T1
Valid prediction for GeneMark_model.20648_t
Valid prediction for snap_scaffold_5-snap.1073-T1
Valid prediction for snap_scaffold_5-snap.1111-T1
Valid prediction for snap_scaffold_5-snap.1090-T1
Valid prediction for snap_scaffold_5-snap.1109-T1
Valid prediction for GeneMark_model.20684_t
Valid prediction for GeneMark_model.20650_t
Valid prediction for GeneMark_model.20638_t
Valid prediction for Augustus_model.g8030.t1
Valid prediction for GlimmerHMM_glimmerT_12191-T1
Valid prediction for GeneMark_model.20685_t
Valid prediction for CodingQuarry_transcript_51937-T1
Valid prediction for GeneMark_model.20687_t
Valid prediction for GlimmerHMM_glimmerT_12201-T1
Valid prediction for snap_scaffold_5-snap.1103-T1
Valid prediction for snap_scaffold_5-snap.1065-T1
Valid prediction for GeneMark_model.20694_t
Valid prediction for snap_scaffold_5-snap.1095-T1
Valid prediction for GlimmerHMM_glimmerT_12205-T1
Valid prediction for GeneMark_model.20671_t
Valid prediction for GeneMark_model.20692_t
Valid prediction for GeneMark_model.20644_t
Valid prediction for GeneMark_model.20662_t
Valid prediction for GlimmerHMM_glimmerT_12192-T1
Valid prediction for GeneMark_model.20664_t
Valid prediction for GeneMark_model.20659_t
Valid prediction for snap_scaffold_5-snap.1097-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_5-snap.1094-T1
Valid prediction for GlimmerHMM_glimmerT_12188-T1
Valid prediction for snap_scaffold_5-snap.1112-T1
Valid prediction for snap_scaffold_5-snap.1102-T1
Valid prediction for snap_scaffold_5-snap.1085-T1
Valid prediction for GeneMark_model.20686_t
Valid prediction for snap_scaffold_5-snap.1105-T1
Valid prediction for GeneMark_model.20689_t
Valid prediction for GeneMark_model.20630_t
Couldn't classify 17830, 17883
Sorry, prediction pasa_asmbl_45430.p1 fails validation.
(AAG)	 GC	17830-17883	GT	AGG
(GTG)	 AG	18010-18135	GT	AGG
(AGA)	 AG	18317-18405	GT	AAG
(GTT)	 AG	18598-18716	GT	AGG
(TGG)	 AG	18864-18925	GG	AAG
-recovered pasa_asmbl_45430.p1, terminal, 18864, 18925
-recovered pasa_asmbl_45430.p1, internal, 18010, 18135
-recovered pasa_asmbl_45430.p1, internal, 18317, 18405
-recovered pasa_asmbl_45430.p1, internal, 18598, 18716
Valid prediction for Augustus_model.g8040.t1
Valid prediction for snap_scaffold_5-snap.1093-T1
Valid prediction for Augustus_model.g8042.t1
Valid prediction for CodingQuarry_transcript_51936-T1
Valid prediction for GeneMark_model.20633_t
Valid prediction for GeneMark_model.20666_t
Valid prediction for Augustus_model.g8039.t1
Valid prediction for GeneMark_model.20639_t
Valid prediction for snap_scaffold_5-snap.1074-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GeneMark_model.20643_t
Valid prediction for GlimmerHMM_glimmerT_12204-T1
Valid prediction for GlimmerHMM_glimmerT_12190-T1
Valid prediction for snap_scaffold_5-snap.1076-T1
Valid prediction for GeneMark_model.20636_t
Valid prediction for Augustus_model.g8033.t1
Valid prediction for GeneMark_model.20665_t
Valid prediction for snap_scaffold_5-snap.1077-T1
Valid prediction for GeneMark_model.20691_t
Valid prediction for snap_scaffold_5-snap.1068-T1
Valid prediction for snap_scaffold_5-snap.1110-T1
Valid prediction for CodingQuarry_transcript_51939-T1
Couldn't classify 32661, 32906
Couldn't classify 35582, 36259
Sorry, prediction pasa_asmbl_45429.p1 fails validation.
(GAG)	 AG	32661-32906	GT	GGG
(GTG)	 AG	33760-33867	GT	AGG
(CTG)	 AG	35582-36259	CC	ACC
-recovered pasa_asmbl_45429.p1, internal, 32661, 32906
-recovered pasa_asmbl_45429.p1, internal, 33760, 33867
Valid prediction for Augustus_model.g8044.t1
Valid prediction for GeneMark_model.20683_t
Valid prediction for GeneMark_model.20628_t
Valid prediction for GeneMark_model.20654_t
Valid prediction for GeneMark_model.20649_t
Couldn't classify 48260, 48459
Sorry, prediction pasa_asmbl_45427.p1 fails validation.
(ATG)	 AG	45146-45176	GT	TGG
(GTA)	 AG	45260-45979	GT	AGG
(GTG)	 AG	46095-46802	GT	AGG
(GGG)	 AG	46931-47049	GT	GGG
(GAA)	 AG	47278-47935	GT	CAG
(TGA)	 AG	48260-48459	GA	TTG
-recovered pasa_asmbl_45427.p1, initial, 45146, 45176
-recovered pasa_asmbl_45427.p1, internal, 45146, 45176
-recovered pasa_asmbl_45427.p1, internal, 45260, 45979
-recovered pasa_asmbl_45427.p1, internal, 46095, 46802
-recovered pasa_asmbl_45427.p1, internal, 46931, 47049
-recovered pasa_asmbl_45427.p1, internal, 47278, 47935
Valid prediction for GeneMark_model.20696_t
Valid prediction for snap_scaffold_5-snap.1084-T1
Valid prediction for GlimmerHMM_glimmerT_12200-T1
Valid prediction for GeneMark_model.20658_t
Valid prediction for GeneMark_model.20698_t
Valid prediction for GlimmerHMM_glimmerT_12196-T1
Valid prediction for GeneMark_model.20652_t
Valid prediction for snap_scaffold_5-snap.1106-T1
Couldn't classify 14139, 14274
Sorry, prediction pasa_asmbl_45432.p1 fails validation.
(ATG)	 GG	13157-13368	GT	AGG
(CAT)	 AG	13638-13772	GT	CAG
(GGC)	 AG	14139-14274	AT	CCA
-recovered pasa_asmbl_45432.p1, initial, 13157, 13368
-recovered pasa_asmbl_45432.p1, internal, 13638, 13772
Valid prediction for GlimmerHMM_glimmerT_12202-T1
Valid prediction for GlimmerHMM_glimmerT_12206-T1
Valid prediction for snap_scaffold_5-snap.1100-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_5-snap.1079-T1
Valid prediction for snap_scaffold_5-snap.1067-T1
Valid prediction for GeneMark_model.20631_t
Valid prediction for GeneMark_model.20681_t
Valid prediction for GeneMark_model.20656_t
Valid prediction for snap_scaffold_5-snap.1082-T1
Valid prediction for Augustus_model.g8045.t1
Valid prediction for Augustus_model.g8053.t1
Valid prediction for GeneMark_model.20645_t
Valid prediction for Augustus_model.g8032.t1
Valid prediction for HiQ_model.g8050.t1
Valid prediction for GeneMark_model.20641_t
Valid prediction for snap_scaffold_5-snap.1083-T1
Valid prediction for Augustus_model.g8035.t1
Valid prediction for GeneMark_model.20675_t
Valid prediction for GeneMark_model.20634_t
Valid prediction for Augustus_model.g8049.t1
Valid prediction for Augustus_model.g8046.t1
Valid prediction for Augustus_model.g8054.t1
Valid prediction for GeneMark_model.20678_t
Valid prediction for GeneMark_model.20670_t
Valid prediction for Augustus_model.g8036.t1
Valid prediction for GlimmerHMM_glimmerT_12198-T1
Valid prediction for GeneMark_model.20661_t
Valid prediction for Augustus_model.g8051.t1
Valid prediction for CodingQuarry_transcript_51938-T1
Valid prediction for Augustus_model.g8048.t1
Valid prediction for snap_scaffold_5-snap.1089-T1
Valid prediction for Augustus_model.g8038.t1
Valid prediction for GeneMark_model.20663_t
Couldn't classify 17170, 17271
Couldn't classify 17815, 17838
Sorry, prediction pasa_asmbl_45431.p1 fails validation.
(TTG)	 TC	17170-17271	GT	AGG
(GGT)	 AG	17470-17661	GT	AGG
(GTG)	 AG	17815-17838	AG	TCA
-recovered pasa_asmbl_45431.p1, internal, 17470, 17661
Valid prediction for pasa_asmbl_45424.p1
Valid prediction for GlimmerHMM_glimmerT_12189-T1
Valid prediction for GeneMark_model.20697_t
Valid prediction for GlimmerHMM_glimmerT_12203-T1
Valid prediction for snap_scaffold_5-snap.1101-T1
Valid prediction for GeneMark_model.20693_t
Valid prediction for GeneMark_model.20674_t
Valid prediction for snap_scaffold_5-snap.1096-T1
Valid prediction for Augustus_model.g8043.t1
Valid prediction for Augustus_model.g8047.t1
Valid prediction for GlimmerHMM_glimmerT_12194-T1
Valid prediction for GeneMark_model.20627_t
Valid prediction for snap_scaffold_5-snap.1108-T1
Valid prediction for GeneMark_model.20672_t
Valid prediction for GeneMark_model.20668_t
Valid prediction for Augustus_model.g8055.t1
Valid prediction for snap_scaffold_5-snap.1080-T1
Valid prediction for Augustus_model.g8037.t1
Valid prediction for snap_scaffold_5-snap.1099-T1
Valid prediction for Augustus_model.g8041.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10727, rend_intergenic: 7215  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19401, rend_intergenic: 12686  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42055, rend_intergenic: 30535  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59964, rend_intergenic: 43916  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77797, rend_intergenic: 61051  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105880, rend_intergenic: 80890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126504, rend_intergenic: 114961  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127614, rend_intergenic: 127168  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148609, rend_intergenic: 127665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154716, rend_intergenic: 148721  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160598, rend_intergenic: 158977  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174250, rend_intergenic: 162446  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198763, rend_intergenic: 195644  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211500, rend_intergenic: 201400  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 216451, rend_intergenic: 212803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225971, rend_intergenic: 220930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 235963, rend_intergenic: 228780  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 8597, rend_intergenic: 8594  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 238285
-exon list size: 950


building trellis

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47.6    
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47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.1    
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49.5    
49.6    
49.7    
49.8    
49.9    
50.0    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.1    
51.2    
51.3    
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51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
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54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
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56.4    
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56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
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84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
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85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 53 predictions from path traversal
Error with prediction: snap lend_intergenic: 10727, rend_intergenic: 7215  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19401, rend_intergenic: 12686  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42055, rend_intergenic: 30535  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59964, rend_intergenic: 43916  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77797, rend_intergenic: 61051  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105880, rend_intergenic: 80890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126504, rend_intergenic: 114961  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127614, rend_intergenic: 127168  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148609, rend_intergenic: 127665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154716, rend_intergenic: 148721  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160598, rend_intergenic: 158977  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174250, rend_intergenic: 162446  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198763, rend_intergenic: 195644  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211500, rend_intergenic: 201400  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 216451, rend_intergenic: 212803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225971, rend_intergenic: 220930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 235963, rend_intergenic: 228780  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 8597, rend_intergenic: 8594  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 227808 - 238285
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support