-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_5/scaffold_5_4513309-4718455 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.20431_t Valid prediction for Augustus_model.g7956.t1 Valid prediction for pasa_asmbl_43938.p1 Couldn't classify 14263, 14382 Sorry, prediction pasa_asmbl_43935.p1 fails validation. (AGG) CC 14263-14382 GT AGG (GCC) AG 15205-15393 GT AGG (GAC) AG 16099-16199 GT AGG (GGT) AG 16423-16519 GT AGG (GTG) AG 16672-16770 GT AGG (GCT) AG 16982-17104 GT TGG (GTG) AG 17505-17687 GT AGG (ACG) AG 18099-18233 GT AGG (CTG) AG 19302-19476 GT GGG (GCA) AG 20443-20578 GT AGG (CAT) AG 21136-21283 GT GGG (ATG) AG 21982-22104 GT AGG (GTG) AG 23513-23595 GT AGG (ACA) AG 23777-23849 GT AGG (GTG) AG 23937-24011 GT AGG (GTG) AG 24452-24587 GT CAG (CAA) AG 25296-25361 GT CGG (AGG) AG 25494-25574 GT CAG (TCG) AG 26224-26304 GT CGG (GGC) AG 26387-26492 GT TGG (GTG) AG 26949-26964 AG AGA -recovered pasa_asmbl_43935.p1, initial, 21982, 22104 -recovered pasa_asmbl_43935.p1, terminal, 26949, 26964 -recovered pasa_asmbl_43935.p1, internal, 15205, 15393 -recovered pasa_asmbl_43935.p1, internal, 16099, 16199 -recovered pasa_asmbl_43935.p1, internal, 16423, 16519 -recovered pasa_asmbl_43935.p1, internal, 16672, 16770 -recovered pasa_asmbl_43935.p1, internal, 16982, 17104 -recovered pasa_asmbl_43935.p1, internal, 17505, 17687 -recovered pasa_asmbl_43935.p1, internal, 18099, 18233 -recovered pasa_asmbl_43935.p1, internal, 19302, 19476 -recovered pasa_asmbl_43935.p1, internal, 20443, 20578 -recovered pasa_asmbl_43935.p1, internal, 21136, 21283 -recovered pasa_asmbl_43935.p1, internal, 21982, 22104 -recovered pasa_asmbl_43935.p1, internal, 23513, 23595 -recovered pasa_asmbl_43935.p1, internal, 23777, 23849 -recovered pasa_asmbl_43935.p1, internal, 23937, 24011 -recovered pasa_asmbl_43935.p1, internal, 24452, 24587 -recovered pasa_asmbl_43935.p1, internal, 25296, 25361 -recovered pasa_asmbl_43935.p1, internal, 25494, 25574 -recovered pasa_asmbl_43935.p1, internal, 26224, 26304 -recovered pasa_asmbl_43935.p1, internal, 26387, 26492 Valid prediction for Augustus_model.g7969.t1 Valid prediction for GeneMark_model.20424_t Valid prediction for snap_scaffold_5-snap.922-T1 Valid prediction for GeneMark_model.20427_t Valid prediction for Augustus_model.g7952.t1 Valid prediction for GeneMark_model.20443_t Valid prediction for GlimmerHMM_glimmerT_12093-T1 Valid prediction for GeneMark_model.20412_t Valid prediction for GeneMark_model.20422_t Valid prediction for GeneMark_model.20444_t Valid prediction for GeneMark_model.20413_t Valid prediction for GeneMark_model.20446_t Valid prediction for CodingQuarry_transcript_51906-T1 Valid prediction for snap_scaffold_5-snap.918-T1 Valid prediction for GeneMark_model.20435_t Valid prediction for GlimmerHMM_glimmerT_12096-T1 Valid prediction for GeneMark_model.20448_t Valid prediction for HiQ_model.g7968.t1 Couldn't classify 93746, 93759 Couldn't classify 96115, 96202 Sorry, prediction pasa_asmbl_43943.p1 fails validation. (CTC) TC 93746-93759 GT ATG (TTT) AG 93944-94041 GT AGG (TGA) AG 94863-94957 GT TGG (ATC) AG 95574-95728 GT TGG (GCA) AG 96115-96202 AT GCA -recovered pasa_asmbl_43943.p1, internal, 93944, 94041 -recovered pasa_asmbl_43943.p1, internal, 94863, 94957 -recovered pasa_asmbl_43943.p1, internal, 95574, 95728 Valid prediction for HiQ_model.g7967.t1 Valid prediction for Augustus_model.g7965.t1 Valid prediction for GeneMark_model.20415_t Valid prediction for snap_scaffold_5-snap.944-T1 Valid prediction for GeneMark_model.20438_t Valid prediction for snap_scaffold_5-snap.926-T1 Valid prediction for snap_scaffold_5-snap.915-T1 Valid prediction for Augustus_model.g7953.t1 Valid prediction for GeneMark_model.20408_t Valid prediction for CodingQuarry_transcript_51910-T1 Valid prediction for GeneMark_model.20420_t Valid prediction for GlimmerHMM_glimmerT_12080-T1 Valid prediction for CodingQuarry_transcript_51898-T1 Couldn't classify 87078, 87488 Sorry, prediction pasa_asmbl_43941.p1 fails validation. (CTG) AG 87078-87488 AC AGA Valid prediction for snap_scaffold_5-snap.911-T1 Couldn't classify 24380, 24587 Sorry, prediction pasa_asmbl_43936.p1 fails validation. (CAT) TG 24380-24587 GT CAG (CAA) AG 25296-25361 GT CGG (AGG) AG 25494-25574 GT CAG (TCG) AG 26224-26304 GT CGG (GGC) AG 26387-26492 GT TGG (GTG) AG 26949-26964 AG AGA -recovered pasa_asmbl_43936.p1, terminal, 26949, 26964 -recovered pasa_asmbl_43936.p1, internal, 25296, 25361 -recovered pasa_asmbl_43936.p1, internal, 25494, 25574 -recovered pasa_asmbl_43936.p1, internal, 26224, 26304 -recovered pasa_asmbl_43936.p1, internal, 26387, 26492 Valid prediction for GeneMark_model.20410_t Valid prediction for GeneMark_model.20417_t Valid prediction for GeneMark_model.20418_t Valid prediction for GlimmerHMM_glimmerT_12083-T1 Valid prediction for GeneMark_model.20405_t Valid prediction for Augustus_model.g7951.t1 Valid prediction for GlimmerHMM_glimmerT_12082-T1 Valid prediction for snap_scaffold_5-snap.921-T1 Valid prediction for snap_scaffold_5-snap.936-T1 Valid prediction for GlimmerHMM_glimmerT_12079-T1 Valid prediction for GeneMark_model.20426_t Valid prediction for GlimmerHMM_glimmerT_12099-T1 Couldn't classify 90427, 90451 Couldn't classify 92081, 92286 Sorry, prediction pasa_asmbl_43942.p1 fails validation. (TTC) AC 90427-90451 GT CGG (TGG) AG 90989-91261 GT AGG (AGG) AG 92081-92286 TG ACT -recovered pasa_asmbl_43942.p1, internal, 90989, 91261 Valid prediction for CodingQuarry_transcript_51907-T1 Valid prediction for snap_scaffold_5-snap.913-T1 Valid prediction for snap_scaffold_5-snap.941-T1 Valid prediction for GlimmerHMM_glimmerT_12077-T1 Valid prediction for CodingQuarry_transcript_51908-T1 Valid prediction for snap_scaffold_5-snap.908-T1 Valid prediction for CodingQuarry_transcript_51909-T1 Valid prediction for snap_scaffold_5-snap.932-T1 Valid prediction for HiQ_model.g7955.t1 Valid prediction for pasa_asmbl_43953.p1 Valid prediction for GeneMark_model.20441_t Valid prediction for GlimmerHMM_glimmerT_12088-T1 Valid prediction for snap_scaffold_5-snap.943-T1 Valid prediction for Augustus_model.g7962.t1 Valid prediction for GlimmerHMM_glimmerT_12085-T1 Valid prediction for snap_scaffold_5-snap.938-T1 Valid prediction for snap_scaffold_5-snap.923-T1 Valid prediction for GlimmerHMM_glimmerT_12102-T1 Valid prediction for GlimmerHMM_glimmerT_12097-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for HiQ_model.g7964.t1 Valid prediction for GeneMark_model.20436_t Valid prediction for GeneMark_model.20416_t Couldn't classify 65775, 65873 Sorry, prediction pasa_asmbl_45361.p1 fails validation. (CCT) TC 65775-65873 GT AGG (GTG) AG 66067-66108 GT AGG (CTG) AG 66556-66664 GT AGG (GCC) AG 66842-67093 GT AGG (GGC) AG 67434-67520 GT CGG (GGA) AG 67621-67652 GC GAG -recovered pasa_asmbl_45361.p1, terminal, 67621, 67652 -recovered pasa_asmbl_45361.p1, internal, 66067, 66108 -recovered pasa_asmbl_45361.p1, internal, 66556, 66664 -recovered pasa_asmbl_45361.p1, internal, 66842, 67093 -recovered pasa_asmbl_45361.p1, internal, 67434, 67520 -recovered pasa_asmbl_45361.p1, internal, 67621, 67652 Valid prediction for snap_scaffold_5-snap.937-T1 Valid prediction for GeneMark_model.20404_t Valid prediction for Augustus_model.g7957.t1 Valid prediction for Augustus_model.g7960.t1 Valid prediction for HiQ_model.g7966.t1 Valid prediction for snap_scaffold_5-snap.933-T1 Valid prediction for GeneMark_model.20433_t Valid prediction for GlimmerHMM_glimmerT_12100-T1 Valid prediction for Augustus_model.g7954.t1 Couldn't classify 71320, 71511 Sorry, prediction pasa_asmbl_45359.p1 fails validation. (TGG) AG 71320-71511 GT CTG (GCT) AG 71775-71867 GT AGG (ACT) AG 72064-72134 GT AGG (ATA) AG 72277-72438 GT GAG (TAA) AG 73222-73272 GT AGG (AAA) AG 73397-73477 GT AAG (CTG) AG 73560-73686 AA AGA -recovered pasa_asmbl_45359.p1, terminal, 73560, 73686 -recovered pasa_asmbl_45359.p1, internal, 71320, 71511 -recovered pasa_asmbl_45359.p1, internal, 71775, 71867 -recovered pasa_asmbl_45359.p1, internal, 72064, 72134 -recovered pasa_asmbl_45359.p1, internal, 72277, 72438 -recovered pasa_asmbl_45359.p1, internal, 73222, 73272 -recovered pasa_asmbl_45359.p1, internal, 73397, 73477 Valid prediction for pasa_asmbl_45353.p1 Valid prediction for GlimmerHMM_glimmerT_12087-T1 Valid prediction for GlimmerHMM_glimmerT_12084-T1 Valid prediction for snap_scaffold_5-snap.914-T1 Couldn't classify 10020, 10030 Sorry, prediction pasa_asmbl_45387.p1 fails validation. (ATG) CT 7594-7636 GT AGG (ATC) AG 8353-8503 GT AGG (GTG) AG 8666-8840 GT AGG (GAC) AG 9190-9217 GT CGG (GCC) AG 9310-9439 GT GAG (AGA) AG 9732-9829 GT AGG (GGG) AG 10020-10030 GG GGG -recovered pasa_asmbl_45387.p1, initial, 7594, 7636 add_exon() Sorry, pasa_asmbl_45387.p1 9732-9829-terminal-2 is invalid. -recovered pasa_asmbl_45387.p1, terminal, 9732, 9829 -recovered pasa_asmbl_45387.p1, internal, 8353, 8503 -recovered pasa_asmbl_45387.p1, internal, 8666, 8840 -recovered pasa_asmbl_45387.p1, internal, 9190, 9217 -recovered pasa_asmbl_45387.p1, internal, 9310, 9439 -recovered pasa_asmbl_45387.p1, internal, 9732, 9829 Valid prediction for CodingQuarry_transcript_51904-T1 Couldn't classify 10082, 10163 Sorry, prediction pasa_asmbl_45384.p1 fails validation. (GGG) CC 10082-10163 GT TGG (GCT) AG 10407-10526 GT CAG (GTT) AG 10764-10928 GT CGG (GTA) AG 11121-11257 GT AGG (GGA) AG 11629-11713 GT AGG (GTT) AG 12255-12372 GT AGG (AGG) AG 12695-12812 GT TGG (GTG) AG 13518-14315 AG GAA -recovered pasa_asmbl_45384.p1, terminal, 13518, 14315 -recovered pasa_asmbl_45384.p1, internal, 10407, 10526 -recovered pasa_asmbl_45384.p1, internal, 10764, 10928 -recovered pasa_asmbl_45384.p1, internal, 11121, 11257 -recovered pasa_asmbl_45384.p1, internal, 11629, 11713 -recovered pasa_asmbl_45384.p1, internal, 12255, 12372 -recovered pasa_asmbl_45384.p1, internal, 12695, 12812 Valid prediction for GeneMark_model.20411_t Valid prediction for GlimmerHMM_glimmerT_12095-T1 Valid prediction for snap_scaffold_5-snap.927-T1 Valid prediction for snap_scaffold_5-snap.939-T1 Valid prediction for snap_scaffold_5-snap.925-T1 Valid prediction for snap_scaffold_5-snap.912-T1 Valid prediction for snap_scaffold_5-snap.930-T1 Valid prediction for HiQ_model.g7970.t1 Valid prediction for GlimmerHMM_glimmerT_12092-T1 Valid prediction for GeneMark_model.20437_t Valid prediction for CodingQuarry_transcript_51900-T1 Valid prediction for GeneMark_model.20440_t Valid prediction for snap_scaffold_5-snap.924-T1 Valid prediction for GeneMark_model.20414_t Couldn't classify 78003, 78104 Sorry, prediction pasa_asmbl_45357.p2 fails validation. (GCA) GT 78003-78104 GT AGG (GTG) AG 78270-78417 GT CGG (AGT) AG 79072-79208 GC AGG -recovered pasa_asmbl_45357.p2, terminal, 79072, 79208 -recovered pasa_asmbl_45357.p2, internal, 78270, 78417 -recovered pasa_asmbl_45357.p2, internal, 79072, 79208 Valid prediction for snap_scaffold_5-snap.945-T1 Valid prediction for snap_scaffold_5-snap.931-T1 Valid prediction for GeneMark_model.20445_t Valid prediction for Augustus_model.g7958.t1 Valid prediction for pasa_asmbl_45371.p1 Valid prediction for snap_scaffold_5-snap.910-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for snap_scaffold_5-snap.909-T1 Valid prediction for GeneMark_model.20409_t Valid prediction for HiQ_model.g7961.t1 Valid prediction for snap_scaffold_5-snap.917-T1 Valid prediction for GeneMark_model.20425_t Valid prediction for snap_scaffold_5-snap.919-T1 Valid prediction for snap_scaffold_5-snap.928-T1 Valid prediction for GlimmerHMM_glimmerT_12101-T1 Valid prediction for GlimmerHMM_glimmerT_12086-T1 Valid prediction for snap_scaffold_5-snap.929-T1 Valid prediction for GeneMark_model.20434_t Valid prediction for GlimmerHMM_glimmerT_12081-T1 Valid prediction for snap_scaffold_5-snap.934-T1 Valid prediction for GeneMark_model.20439_t Valid prediction for CodingQuarry_transcript_51901-T1 Valid prediction for GeneMark_model.20442_t Valid prediction for snap_scaffold_5-snap.920-T1 Valid prediction for snap_scaffold_5-snap.935-T1 Valid prediction for GeneMark_model.20447_t Valid prediction for GeneMark_model.20430_t Valid prediction for CodingQuarry_transcript_51902-T1 Couldn't classify 49431, 49594 Sorry, prediction pasa_asmbl_45366.p1 fails validation. (ACC) AG 49431-49594 GT CGG (CAA) AG 49730-49883 GT GGG (GTG) AG 50532-50697 GT AGG (TGT) AG 50854-51073 GT ACG (GAA) AG 51174-51303 GT AGG (GTC) AG 51465-51659 GT CTG (GGC) AG 51775-51906 GT AGG (GAA) AG 52052-52215 GT TAG (TGA) AG 52317-52443 GT ATG (GTG) AG 52665-52828 GT AAG (GCA) AG 53029-53149 GT AGG (AGC) AG 53249-53422 GT AGG (GAG) AG 53679-53789 GT AGG (GAG) AG 53985-54140 AC AGA -recovered pasa_asmbl_45366.p1, terminal, 53985, 54140 -recovered pasa_asmbl_45366.p1, internal, 49431, 49594 -recovered pasa_asmbl_45366.p1, internal, 49730, 49883 -recovered pasa_asmbl_45366.p1, internal, 50532, 50697 -recovered pasa_asmbl_45366.p1, internal, 50854, 51073 -recovered pasa_asmbl_45366.p1, internal, 51174, 51303 -recovered pasa_asmbl_45366.p1, internal, 51465, 51659 -recovered pasa_asmbl_45366.p1, internal, 51775, 51906 -recovered pasa_asmbl_45366.p1, internal, 52052, 52215 -recovered pasa_asmbl_45366.p1, internal, 52317, 52443 -recovered pasa_asmbl_45366.p1, internal, 52665, 52828 -recovered pasa_asmbl_45366.p1, internal, 53029, 53149 -recovered pasa_asmbl_45366.p1, internal, 53249, 53422 -recovered pasa_asmbl_45366.p1, internal, 53679, 53789 Couldn't classify 82023, 82310 Couldn't classify 82994, 83029 Sorry, prediction pasa_asmbl_46430.p1 fails validation. (CAC) TC 82023-82310 GT AGG (CCT) AG 82994-83029 GG GGG Valid prediction for pasa_asmbl_45370.p1 Valid prediction for CodingQuarry_transcript_51903-T1 Valid prediction for GlimmerHMM_glimmerT_12094-T1 Valid prediction for Augustus_model.g7963.t1 Valid prediction for HiQ_model.g7959.t1 Valid prediction for GlimmerHMM_glimmerT_12098-T1 Valid prediction for pasa_asmbl_45350.p1 Valid prediction for CodingQuarry_transcript_51905-T1 Valid prediction for GeneMark_model.20406_t Valid prediction for GeneMark_model.20428_t Valid prediction for GeneMark_model.20407_t Valid prediction for snap_scaffold_5-snap.942-T1 Valid prediction for GeneMark_model.20429_t Valid prediction for GeneMark_model.20432_t Valid prediction for snap_scaffold_5-snap.946-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for snap_scaffold_5-snap.916-T1 Valid prediction for GeneMark_model.20423_t Valid prediction for GlimmerHMM_glimmerT_12089-T1 Couldn't classify 58705, 59090 Couldn't classify 62589, 62638 Sorry, prediction pasa_asmbl_45363.p1 fails validation. (CTG) AG 58705-59090 GT AGG (GAA) AG 60182-60306 GT CTG (GTG) AG 60593-60693 GT AGG (CTT) AG 60932-61090 GT AGG (TAC) AG 61789-61867 GT AGG (ATG) AG 62279-62323 GT AGG (GGA) AG 62589-62638 TA GAT -recovered pasa_asmbl_45363.p1, initial, 62279, 62323 add_exon() Sorry, pasa_asmbl_45363.p1 58705-59090-terminal-2 is invalid. -recovered pasa_asmbl_45363.p1, terminal, 58705, 59090 -recovered pasa_asmbl_45363.p1, internal, 58705, 59090 -recovered pasa_asmbl_45363.p1, internal, 60182, 60306 -recovered pasa_asmbl_45363.p1, internal, 60593, 60693 -recovered pasa_asmbl_45363.p1, internal, 60932, 61090 -recovered pasa_asmbl_45363.p1, internal, 61789, 61867 -recovered pasa_asmbl_45363.p1, internal, 62279, 62323 Valid prediction for GeneMark_model.20419_t Valid prediction for snap_scaffold_5-snap.940-T1 Valid prediction for GeneMark_model.20421_t Couldn't classify 74671, 75009 Sorry, prediction pasa_asmbl_45358.p1 fails validation. (AGA) AA 74671-75009 AT ACA Valid prediction for GlimmerHMM_glimmerT_12090-T1 Valid prediction for GlimmerHMM_glimmerT_12091-T1 Valid prediction for GlimmerHMM_glimmerT_12078-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 19580, rend_intergenic: 2982 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27028, rend_intergenic: 20360 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 53739, rend_intergenic: 51242 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 96437, rend_intergenic: 92025 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100536, rend_intergenic: 99788 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 106363, rend_intergenic: 102020 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 127154, rend_intergenic: 117891 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 145612, rend_intergenic: 139282 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 190225, rend_intergenic: 189955 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 205147 -exon list size: 739 building trellis 0.1 0.3 0.4 0.5 0.7 0.8 0.9 1.1 1.2 1.3 1.5 1.6 1.8 1.9 2.0 2.2 2.3 2.4 2.6 2.7 2.8 3.0 3.1 3.2 3.4 3.5 3.6 3.8 3.9 4.0 4.2 4.3 4.5 4.6 4.7 4.9 5.0 5.1 5.3 5.4 5.5 5.7 5.8 5.9 6.1 6.2 6.3 6.5 6.6 6.7 6.9 7.0 7.2 7.3 7.4 7.6 7.7 7.8 8.0 8.1 8.2 8.4 8.5 8.6 8.8 8.9 9.0 9.2 9.3 9.4 9.6 9.7 9.9 10.0 10.1 10.3 10.4 10.5 10.7 10.8 10.9 11.1 11.2 11.3 11.5 11.6 11.7 11.9 12.0 12.1 12.3 12.4 12.6 12.7 12.8 13.0 13.1 13.2 13.4 13.5 13.6 13.8 13.9 14.0 14.2 14.3 14.4 14.6 14.7 14.8 15.0 15.1 15.2 15.4 15.5 15.7 15.8 15.9 16.1 16.2 16.3 16.5 16.6 16.7 16.9 17.0 17.1 17.3 17.4 17.5 17.7 17.8 17.9 18.1 18.2 18.4 18.5 18.6 18.8 18.9 19.0 19.2 19.3 19.4 19.6 19.7 19.8 20.0 20.1 20.2 20.4 20.5 20.6 20.8 20.9 21.1 21.2 21.3 21.5 21.6 21.7 21.9 22.0 22.1 22.3 22.4 22.5 22.7 22.8 22.9 23.1 23.2 23.3 23.5 23.6 23.8 23.9 24.0 24.2 24.3 24.4 24.6 24.7 24.8 25.0 25.1 25.2 25.4 25.5 25.6 25.8 25.9 26.0 26.2 26.3 26.5 26.6 26.7 26.9 27.0 27.1 27.3 27.4 27.5 27.7 27.8 27.9 28.1 28.2 28.3 28.5 28.6 28.7 28.9 29.0 29.1 29.3 29.4 29.6 29.7 29.8 30.0 30.1 30.2 30.4 30.5 30.6 30.8 30.9 31.0 31.2 31.3 31.4 31.6 31.7 31.8 32.0 32.1 32.3 32.4 32.5 32.7 32.8 32.9 33.1 33.2 33.3 33.5 33.6 33.7 33.9 34.0 34.1 34.3 34.4 34.5 34.7 34.8 35.0 35.1 35.2 35.4 35.5 35.6 35.8 35.9 36.0 36.2 36.3 36.4 36.6 36.7 36.8 37.0 37.1 37.2 37.4 37.5 37.7 37.8 37.9 38.1 38.2 38.3 38.5 38.6 38.7 38.9 39.0 39.1 39.3 39.4 39.5 39.7 39.8 39.9 40.1 40.2 40.4 40.5 40.6 40.8 40.9 41.0 41.2 41.3 41.4 41.6 41.7 41.8 42.0 42.1 42.2 42.4 42.5 42.6 42.8 42.9 43.0 43.2 43.3 43.5 43.6 43.7 43.9 44.0 44.1 44.3 44.4 44.5 44.7 44.8 44.9 45.1 45.2 45.3 45.5 45.6 45.7 45.9 46.0 46.2 46.3 46.4 46.6 46.7 46.8 47.0 47.1 47.2 47.4 47.5 47.6 47.8 47.9 48.0 48.2 48.3 48.4 48.6 48.7 48.9 49.0 49.1 49.3 49.4 49.5 49.7 49.8 49.9 50.1 50.2 50.3 50.5 50.6 50.7 50.9 51.0 51.1 51.3 51.4 51.6 51.7 51.8 52.0 52.1 52.2 52.4 52.5 52.6 52.8 52.9 53.0 53.2 53.3 53.4 53.6 53.7 53.8 54.0 54.1 54.3 54.4 54.5 54.7 54.8 54.9 55.1 55.2 55.3 55.5 55.6 55.7 55.9 56.0 56.1 56.3 56.4 56.5 56.7 56.8 57.0 57.1 57.2 57.4 57.5 57.6 57.8 57.9 58.0 58.2 58.3 58.4 58.6 58.7 58.8 59.0 59.1 59.2 59.4 59.5 59.6 59.8 59.9 60.1 60.2 60.3 60.5 60.6 60.7 60.9 61.0 61.1 61.3 61.4 61.5 61.7 61.8 61.9 62.1 62.2 62.3 62.5 62.6 62.8 62.9 63.0 63.2 63.3 63.4 63.6 63.7 63.8 64.0 64.1 64.2 64.4 64.5 64.6 64.8 64.9 65.0 65.2 65.3 65.5 65.6 65.7 65.9 66.0 66.1 66.3 66.4 66.5 66.7 66.8 66.9 67.1 67.2 67.3 67.5 67.6 67.7 67.9 68.0 68.2 68.3 68.4 68.6 68.7 68.8 69.0 69.1 69.2 69.4 69.5 69.6 69.8 69.9 70.0 70.2 70.3 70.4 70.6 70.7 70.9 71.0 71.1 71.3 71.4 71.5 71.7 71.8 71.9 72.1 72.2 72.3 72.5 72.6 72.7 72.9 73.0 73.1 73.3 73.4 73.5 73.7 73.8 74.0 74.1 74.2 74.4 74.5 74.6 74.8 74.9 75.0 75.2 75.3 75.4 75.6 75.7 75.8 76.0 76.1 76.2 76.4 76.5 76.7 76.8 76.9 77.1 77.2 77.3 77.5 77.6 77.7 77.9 78.0 78.1 78.3 78.4 78.5 78.7 78.8 78.9 79.1 79.2 79.4 79.5 79.6 79.8 79.9 80.0 80.2 80.3 80.4 80.6 80.7 80.8 81.0 81.1 81.2 81.4 81.5 81.6 81.8 81.9 82.1 82.2 82.3 82.5 82.6 82.7 82.9 83.0 83.1 83.3 83.4 83.5 83.7 83.8 83.9 84.1 84.2 84.3 84.5 84.6 84.8 84.9 85.0 85.2 85.3 85.4 85.6 85.7 85.8 86.0 86.1 86.2 86.4 86.5 86.6 86.8 86.9 87.0 87.2 87.3 87.4 87.6 87.7 87.9 88.0 88.1 88.3 88.4 88.5 88.7 88.8 88.9 89.1 89.2 89.3 89.5 89.6 89.7 89.9 90.0 90.1 90.3 90.4 90.6 90.7 90.8 91.0 91.1 91.2 91.4 91.5 91.6 91.8 91.9 92.0 92.2 92.3 92.4 92.6 92.7 92.8 93.0 93.1 93.3 93.4 93.5 93.7 93.8 93.9 94.1 94.2 94.3 94.5 94.6 94.7 94.9 95.0 95.1 95.3 95.4 95.5 95.7 95.8 96.0 96.1 96.2 96.4 96.5 96.6 96.8 96.9 97.0 97.2 97.3 97.4 97.6 97.7 97.8 98.0 98.1 98.2 98.4 98.5 98.7 98.8 98.9 99.1 99.2 99.3 99.5 99.6 99.7 99.9 -found 24 predictions from path traversal Error with prediction: snap lend_intergenic: 19580, rend_intergenic: 2982 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27028, rend_intergenic: 20360 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 53739, rend_intergenic: 51242 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 96437, rend_intergenic: 92025 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100536, rend_intergenic: 99788 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 106363, rend_intergenic: 102020 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 127154, rend_intergenic: 117891 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 145612, rend_intergenic: 139282 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 190225, rend_intergenic: 189955 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 17 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 14264 -exon list size: 59 building trellis 1.6 3.3 4.9 6.6 8.2 9.8 11.5 13.1 14.8 16.4 18.0 19.7 21.3 23.0 24.6 26.2 27.9 29.5 31.1 32.8 34.4 36.1 37.7 39.3 41.0 42.6 44.3 45.9 47.5 49.2 50.8 52.5 54.1 55.7 57.4 59.0 60.7 62.3 63.9 65.6 67.2 68.9 70.5 72.1 73.8 75.4 77.0 78.7 80.3 82.0 83.6 85.2 86.9 88.5 90.2 91.8 93.4 95.1 96.7 98.4 -found 2 predictions from path traversal -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support