-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_5/scaffold_5_18457090-18731978 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.23527_t Valid prediction for snap_scaffold_5-snap.3485-T1 Valid prediction for snap_scaffold_5-snap.3500-T1 Valid prediction for GlimmerHMM_glimmerT_13995-T1 Valid prediction for snap_scaffold_5-snap.3504-T1 Valid prediction for snap_scaffold_5-snap.3515-T1 Valid prediction for snap_scaffold_5-snap.3510-T1 Valid prediction for HiQ_model.g9334.t1 Valid prediction for GeneMark_model.23487_t Couldn't classify 115652, 115689 Sorry, prediction pasa_asmbl_44928.p1 fails validation. (GTT) CA 115652-115689 GT CGG (GTG) AG 116446-117263 GT AGG (GTA) AG 117523-117674 GT AGG (CTG) AG 117832-117961 GT AGG (GGG) AG 118070-118204 GT CGG (GTT) AG 118425-118567 GT AGG (GTT) AG 119062-119164 GT TGG (AGA) AG 119450-119868 GA AGG -recovered pasa_asmbl_44928.p1, terminal, 119450, 119868 -recovered pasa_asmbl_44928.p1, internal, 116446, 117263 -recovered pasa_asmbl_44928.p1, internal, 117523, 117674 -recovered pasa_asmbl_44928.p1, internal, 117832, 117961 -recovered pasa_asmbl_44928.p1, internal, 118070, 118204 -recovered pasa_asmbl_44928.p1, internal, 118425, 118567 -recovered pasa_asmbl_44928.p1, internal, 119062, 119164 Valid prediction for GeneMark_model.23469_t Valid prediction for Augustus_model.g9347.t1 Valid prediction for GlimmerHMM_glimmerT_14006-T1 Valid prediction for snap_scaffold_5-snap.3483-T1 Valid prediction for GlimmerHMM_glimmerT_13998-T1 Valid prediction for GeneMark_model.23474_t Valid prediction for snap_scaffold_5-snap.3506-T1 Valid prediction for GlimmerHMM_glimmerT_14011-T1 Valid prediction for Augustus_model.g9350.t1 Valid prediction for GlimmerHMM_glimmerT_14004-T1 Valid prediction for GeneMark_model.23519_t Valid prediction for GlimmerHMM_glimmerT_13986-T1 Valid prediction for snap_scaffold_5-snap.3520-T1 Couldn't classify 103382, 103466 Sorry, prediction pasa_asmbl_44922.p1 fails validation. (TCG) TT 103382-103466 GT CGG (GTC) AG 103838-103928 GT TTG (TTT) AG 104061-104138 GT GGG (GCC) AG 104982-105072 GG GAG -recovered pasa_asmbl_44922.p1, terminal, 104982, 105072 -recovered pasa_asmbl_44922.p1, internal, 103838, 103928 -recovered pasa_asmbl_44922.p1, internal, 104061, 104138 Valid prediction for GlimmerHMM_glimmerT_13987-T1 Valid prediction for snap_scaffold_5-snap.3495-T1 Valid prediction for GlimmerHMM_glimmerT_14001-T1 Valid prediction for GeneMark_model.23495_t Valid prediction for GlimmerHMM_glimmerT_14023-T1 Valid prediction for snap_scaffold_5-snap.3522-T1 Valid prediction for Augustus_model.g9337.t1 Valid prediction for snap_scaffold_5-snap.3475-T1 Valid prediction for CodingQuarry_transcript_52330-T1 Valid prediction for GeneMark_model.23476_t Valid prediction for GlimmerHMM_glimmerT_14017-T1 Valid prediction for GeneMark_model.23462_t Valid prediction for GeneMark_model.23539_t Valid prediction for GeneMark_model.23540_t Valid prediction for snap_scaffold_5-snap.3493-T1 Valid prediction for GeneMark_model.23497_t Couldn't classify 15481, 15651 Couldn't classify 19762, 19881 Sorry, prediction pasa_asmbl_45019.p1 fails validation. (GAT) CA 15481-15651 GT AGG (ATC) AG 17229-17291 GT AGG (ACG) AG 19762-19881 GT AGG -recovered pasa_asmbl_45019.p1, internal, 17229, 17291 -recovered pasa_asmbl_45019.p1, internal, 19762, 19881 Valid prediction for snap_scaffold_5-snap.3502-T1 Valid prediction for GeneMark_model.23468_t Valid prediction for GlimmerHMM_glimmerT_14016-T1 Valid prediction for snap_scaffold_5-snap.3498-T1 Valid prediction for Augustus_model.g9355.t1 Valid prediction for Augustus_model.g9349.t1 Valid prediction for GeneMark_model.23542_t Valid prediction for GlimmerHMM_glimmerT_14002-T1 Valid prediction for GeneMark_model.23472_t Valid prediction for GeneMark_model.23504_t Valid prediction for snap_scaffold_5-snap.3476-T1 Valid prediction for GlimmerHMM_glimmerT_14010-T1 Valid prediction for GeneMark_model.23460_t Valid prediction for GeneMark_model.23471_t Valid prediction for snap_scaffold_5-snap.3512-T1 Valid prediction for Augustus_model.g9336.t1 Valid prediction for GeneMark_model.23492_t Valid prediction for pasa_asmbl_44918.p1 Valid prediction for Augustus_model.g9360.t1 Valid prediction for snap_scaffold_5-snap.3535-T1 Valid prediction for GeneMark_model.23480_t Valid prediction for GeneMark_model.23500_t Valid prediction for GeneMark_model.23485_t Valid prediction for Augustus_model.g9333.t1 Valid prediction for snap_scaffold_5-snap.3477-T1 Valid prediction for GeneMark_model.23483_t Valid prediction for GlimmerHMM_glimmerT_14008-T1 Valid prediction for CodingQuarry_transcript_52331-T1 Valid prediction for GlimmerHMM_glimmerT_13997-T1 Valid prediction for GlimmerHMM_glimmerT_13999-T1 Valid prediction for GeneMark_model.23537_t Valid prediction for Augustus_model.g9344.t1 Valid prediction for GeneMark_model.23517_t Valid prediction for snap_scaffold_5-snap.3480-T1 Valid prediction for GeneMark_model.23523_t Valid prediction for GeneMark_model.23515_t Valid prediction for GeneMark_model.23490_t Valid prediction for Augustus_model.g9338.t1 Valid prediction for snap_scaffold_5-snap.3507-T1 Valid prediction for snap_scaffold_5-snap.3489-T1 Valid prediction for GeneMark_model.23533_t Valid prediction for snap_scaffold_5-snap.3479-T1 Valid prediction for Augustus_model.g9342.t1 Valid prediction for GeneMark_model.23478_t Valid prediction for snap_scaffold_5-snap.3492-T1 Valid prediction for GeneMark_model.23512_t Valid prediction for snap_scaffold_5-snap.3501-T1 Valid prediction for GeneMark_model.23464_t Valid prediction for GeneMark_model.23494_t Valid prediction for GeneMark_model.23521_t Valid prediction for snap_scaffold_5-snap.3505-T1 Valid prediction for GeneMark_model.23511_t Valid prediction for snap_scaffold_5-snap.3525-T1 Valid prediction for GeneMark_model.23506_t Valid prediction for GeneMark_model.23509_t Valid prediction for GlimmerHMM_glimmerT_13988-T1 Valid prediction for Augustus_model.g9339.t1 Valid prediction for GeneMark_model.23466_t Valid prediction for snap_scaffold_5-snap.3486-T1 Valid prediction for GlimmerHMM_glimmerT_14007-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_14024-T1 Valid prediction for pasa_asmbl_46222.p1 Valid prediction for Augustus_model.g9345.t1 Valid prediction for GeneMark_model.23513_t Valid prediction for CodingQuarry_transcript_52338-T1 Valid prediction for pasa_asmbl_46234.p2 Valid prediction for pasa_asmbl_46224.p1 Valid prediction for GlimmerHMM_glimmerT_14025-T1 Valid prediction for GlimmerHMM_glimmerT_13989-T1 Valid prediction for GeneMark_model.23489_t Valid prediction for GeneMark_model.23496_t Valid prediction for GlimmerHMM_glimmerT_14029-T1 Valid prediction for GeneMark_model.23516_t Valid prediction for GeneMark_model.23461_t Valid prediction for HiQ_model.g9353.t1 Valid prediction for CodingQuarry_transcript_52333-T1 Valid prediction for snap_scaffold_5-snap.3516-T1 Valid prediction for GeneMark_model.23508_t Valid prediction for GlimmerHMM_glimmerT_13990-T1 Valid prediction for GeneMark_model.23488_t Valid prediction for GeneMark_model.23522_t Valid prediction for Augustus_model.g9346.t1 Valid prediction for GlimmerHMM_glimmerT_14021-T1 Valid prediction for snap_scaffold_5-snap.3484-T1 Valid prediction for snap_scaffold_5-snap.3497-T1 Valid prediction for CodingQuarry_transcript_52340-T1 Valid prediction for snap_scaffold_5-snap.3532-T1 Valid prediction for GlimmerHMM_glimmerT_14022-T1 Valid prediction for Augustus_model.g9354.t1 Valid prediction for GeneMark_model.23501_t Couldn't classify 164664, 164828 Sorry, prediction pasa_asmbl_46223.p2 fails validation. (ATG) TA 164336-164470 GT AGG (CAA) AG 164664-164828 CT GAC -recovered pasa_asmbl_46223.p2, initial, 164336, 164470 Valid prediction for GeneMark_model.23470_t Valid prediction for GeneMark_model.23535_t Valid prediction for GlimmerHMM_glimmerT_13994-T1 Valid prediction for Augustus_model.g9341.t1 Valid prediction for GlimmerHMM_glimmerT_14014-T1 Valid prediction for HiQ_model.g9362.t1 Valid prediction for snap_scaffold_5-snap.3511-T1 Valid prediction for GeneMark_model.23505_t Valid prediction for HiQ_model.g9359.t1 Valid prediction for GlimmerHMM_glimmerT_14018-T1 Couldn't classify 223642, 223761 Sorry, prediction pasa_asmbl_46216.p1 fails validation. (ACG) AG 223642-223761 GT AGG (GAC) AG 223845-223938 GT AGG (GGG) AG 224226-224345 GT TGG (AAC) AG 224495-224637 GT GGG (AAT) AG 225243-225357 GT GCG (GGG) AG 225860-225929 GT AGG (CAG) AG 226036-226180 GT TGG (TGT) AG 226700-227011 GT AGG (GAT) AG 227104-227145 GT GGG (CAA) AG 227349-227506 GT CGG (GCG) AG 227927-227982 GT AGG (ATC) AG 228490-228629 GT AGG (CTG) AG 228770-229258 TG AAT -recovered pasa_asmbl_46216.p1, terminal, 223845, 223938 -recovered pasa_asmbl_46216.p1, terminal, 228770, 229258 -recovered pasa_asmbl_46216.p1, internal, 223642, 223761 -recovered pasa_asmbl_46216.p1, internal, 223845, 223938 -recovered pasa_asmbl_46216.p1, internal, 224226, 224345 -recovered pasa_asmbl_46216.p1, internal, 224495, 224637 -recovered pasa_asmbl_46216.p1, internal, 225243, 225357 -recovered pasa_asmbl_46216.p1, internal, 225860, 225929 -recovered pasa_asmbl_46216.p1, internal, 226036, 226180 -recovered pasa_asmbl_46216.p1, internal, 226700, 227011 -recovered pasa_asmbl_46216.p1, internal, 227104, 227145 -recovered pasa_asmbl_46216.p1, internal, 227349, 227506 -recovered pasa_asmbl_46216.p1, internal, 227927, 227982 -recovered pasa_asmbl_46216.p1, internal, 228490, 228629 Valid prediction for GlimmerHMM_glimmerT_13985-T1 Valid prediction for CodingQuarry_transcript_52334-T1 Valid prediction for snap_scaffold_5-snap.3528-T1 Valid prediction for Augustus_model.g9356.t1 Valid prediction for GlimmerHMM_glimmerT_14012-T1 Valid prediction for GlimmerHMM_glimmerT_14026-T1 Valid prediction for GeneMark_model.23484_t Valid prediction for GeneMark_model.23524_t Valid prediction for snap_scaffold_5-snap.3490-T1 Valid prediction for snap_scaffold_5-snap.3478-T1 Valid prediction for GeneMark_model.23481_t Valid prediction for GeneMark_model.23538_t Valid prediction for GeneMark_model.23473_t Valid prediction for CodingQuarry_transcript_52337-T1 Valid prediction for GlimmerHMM_glimmerT_14027-T1 Couldn't classify 12701, 12814 Sorry, prediction pasa_asmbl_46247.p1 fails validation. (ATG) GA 10454-10500 GT TGG (CTT) AG 11282-11336 GT AGG (GAT) AG 11522-11595 GT CAG (CAT) AG 11812-11870 GT CGG (ACG) AG 12039-12159 GT AGG (GTG) AG 12248-12378 GT TGG (CGT) AG 12515-12582 GT TGG (AGG) AG 12701-12814 CG AGC -recovered pasa_asmbl_46247.p1, initial, 10454, 10500 -recovered pasa_asmbl_46247.p1, internal, 11282, 11336 -recovered pasa_asmbl_46247.p1, internal, 11522, 11595 -recovered pasa_asmbl_46247.p1, internal, 11812, 11870 -recovered pasa_asmbl_46247.p1, internal, 12039, 12159 -recovered pasa_asmbl_46247.p1, internal, 12248, 12378 -recovered pasa_asmbl_46247.p1, internal, 12515, 12582 Valid prediction for GlimmerHMM_glimmerT_14000-T1 Valid prediction for snap_scaffold_5-snap.3518-T1 Valid prediction for snap_scaffold_5-snap.3487-T1 Valid prediction for snap_scaffold_5-snap.3503-T1 Valid prediction for pasa_asmbl_46241.p1 Valid prediction for Augustus_model.g9348.t1 Valid prediction for GlimmerHMM_glimmerT_14028-T1 Valid prediction for snap_scaffold_5-snap.3536-T1 Valid prediction for GlimmerHMM_glimmerT_14015-T1 Valid prediction for GeneMark_model.23514_t Valid prediction for GeneMark_model.23518_t Valid prediction for HiQ_model.g9365.t1 Valid prediction for GeneMark_model.23532_t Valid prediction for CodingQuarry_transcript_52336-T1 Valid prediction for Augustus_model.g9358.t1 Valid prediction for snap_scaffold_5-snap.3530-T1 Valid prediction for snap_scaffold_5-snap.3494-T1 Valid prediction for GeneMark_model.23486_t Valid prediction for snap_scaffold_5-snap.3526-T1 Valid prediction for pasa_asmbl_46228.p1 Valid prediction for snap_scaffold_5-snap.3508-T1 Valid prediction for snap_scaffold_5-snap.3496-T1 Valid prediction for GeneMark_model.23499_t Valid prediction for snap_scaffold_5-snap.3523-T1 Valid prediction for Augustus_model.g9364.t1 Valid prediction for HiQ_model.g9361.t1 Valid prediction for GeneMark_model.23475_t Valid prediction for GlimmerHMM_glimmerT_14019-T1 Valid prediction for GeneMark_model.23463_t Valid prediction for GlimmerHMM_glimmerT_14020-T1 Valid prediction for GeneMark_model.23507_t Valid prediction for Augustus_model.g9352.t1 Valid prediction for GeneMark_model.23510_t Couldn't classify 219395, 219427 Sorry, prediction pasa_asmbl_46218.p1 fails validation. (ATG) CG 217656-217818 GT AGG (AAC) AG 218043-218200 GT AGG (ATC) AG 219395-219427 GA AGG -recovered pasa_asmbl_46218.p1, initial, 217656, 217818 -recovered pasa_asmbl_46218.p1, internal, 218043, 218200 Valid prediction for snap_scaffold_5-snap.3509-T1 Valid prediction for GeneMark_model.23467_t Valid prediction for snap_scaffold_5-snap.3534-T1 Valid prediction for GeneMark_model.23479_t Valid prediction for snap_scaffold_5-snap.3474-T1 Valid prediction for CodingQuarry_transcript_52339-T1 Valid prediction for HiQ_model.g9340.t1 Valid prediction for GlimmerHMM_glimmerT_13992-T1 Valid prediction for pasa_asmbl_46240.p1 Valid prediction for Augustus_model.g9343.t1 Valid prediction for GeneMark_model.23536_t Valid prediction for GeneMark_model.23493_t Valid prediction for Augustus_model.g9366.t1 Valid prediction for GlimmerHMM_glimmerT_13996-T1 Valid prediction for snap_scaffold_5-snap.3519-T1 Valid prediction for GeneMark_model.23534_t Valid prediction for GeneMark_model.23520_t Valid prediction for GeneMark_model.23503_t Valid prediction for GeneMark_model.23525_t Valid prediction for GeneMark_model.23541_t Valid prediction for snap_scaffold_5-snap.3521-T1 Valid prediction for GlimmerHMM_glimmerT_14013-T1 Valid prediction for GlimmerHMM_glimmerT_14003-T1 Valid prediction for snap_scaffold_5-snap.3533-T1 Valid prediction for GeneMark_model.23531_t Valid prediction for snap_scaffold_5-snap.3524-T1 Valid prediction for snap_scaffold_5-snap.3517-T1 Valid prediction for GlimmerHMM_glimmerT_14005-T1 Valid prediction for GlimmerHMM_glimmerT_13991-T1 Valid prediction for CodingQuarry_transcript_52335-T1 Valid prediction for Augustus_model.g9335.t1 Valid prediction for HiQ_model.g9351.t1 Valid prediction for snap_scaffold_5-snap.3482-T1 Valid prediction for snap_scaffold_5-snap.3481-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for snap_scaffold_5-snap.3514-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GeneMark_model.23498_t Valid prediction for snap_scaffold_5-snap.3491-T1 Valid prediction for snap_scaffold_5-snap.3488-T1 Valid prediction for Augustus_model.g9357.t1 Valid prediction for snap_scaffold_5-snap.3531-T1 Valid prediction for GlimmerHMM_glimmerT_14009-T1 Valid prediction for GeneMark_model.23491_t Valid prediction for GeneMark_model.23465_t Valid prediction for snap_scaffold_5-snap.3527-T1 Valid prediction for HiQ_model.g9363.t1 Valid prediction for GeneMark_model.23477_t Valid prediction for GeneMark_model.23526_t Valid prediction for snap_scaffold_5-snap.3529-T1 Valid prediction for snap_scaffold_5-snap.3499-T1 Valid prediction for GeneMark_model.23528_t Couldn't classify 70746, 70840 Couldn't classify 70952, 71201 Sorry, prediction pasa_asmbl_46416.p1 fails validation. (AGT) GC 70746-70840 GT AGG (CTT) AG 70952-71201 AA ACA Valid prediction for snap_scaffold_5-snap.3513-T1 Valid prediction for GeneMark_model.23530_t Valid prediction for GeneMark_model.23482_t Valid prediction for GeneMark_model.23529_t Valid prediction for GlimmerHMM_glimmerT_13993-T1 Couldn't classify 161951, 162307 Sorry, prediction pasa_asmbl_46306.p1 fails validation. (GCG) CA 161951-162307 GA AGG -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 90390, rend_intergenic: 90387 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 19243, rend_intergenic: 2071 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 21707, rend_intergenic: 19373 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 29997, rend_intergenic: 21713 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 34892, rend_intergenic: 30888 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 48047, rend_intergenic: 45632 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 57231, rend_intergenic: 48711 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 60605, rend_intergenic: 57231 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 64259, rend_intergenic: 61053 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75235, rend_intergenic: 64474 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 91935, rend_intergenic: 75250 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 95316, rend_intergenic: 92640 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 102994, rend_intergenic: 95446 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 145095, rend_intergenic: 132071 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 169173, rend_intergenic: 155319 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 180350, rend_intergenic: 176900 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 195636, rend_intergenic: 185061 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 199861, rend_intergenic: 197293 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 227870, rend_intergenic: 225430 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 236469, rend_intergenic: 230095 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 269057, rend_intergenic: 268667 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 272427, rend_intergenic: 269651 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 274889 -exon list size: 1169 building trellis 0.1 0.2 0.3 0.3 0.4 0.5 0.6 0.7 0.8 0.9 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.5 1.6 1.7 1.8 1.9 2.0 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.6 2.7 2.8 2.9 3.0 3.1 3.2 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.8 3.9 4.0 4.1 4.2 4.3 4.4 4.4 4.5 4.6 4.7 4.8 4.9 5.0 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.6 5.7 5.8 5.9 6.0 6.1 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.7 6.8 6.9 7.0 7.1 7.2 7.3 7.3 7.4 7.5 7.6 7.7 7.8 7.9 7.9 8.0 8.1 8.2 8.3 8.4 8.5 8.5 8.6 8.7 8.8 8.9 9.0 9.1 9.1 9.2 9.3 9.4 9.5 9.6 9.6 9.7 9.8 9.9 10.0 10.1 10.2 10.2 10.3 10.4 10.5 10.6 10.7 10.8 10.8 10.9 11.0 11.1 11.2 11.3 11.4 11.4 11.5 11.6 11.7 11.8 11.9 12.0 12.0 12.1 12.2 12.3 12.4 12.5 12.6 12.6 12.7 12.8 12.9 13.0 13.1 13.2 13.2 13.3 13.4 13.5 13.6 13.7 13.7 13.8 13.9 14.0 14.1 14.2 14.3 14.3 14.4 14.5 14.6 14.7 14.8 14.9 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.5 15.6 15.7 15.8 15.9 16.0 16.1 16.1 16.2 16.3 16.4 16.5 16.6 16.7 16.7 16.8 16.9 17.0 17.1 17.2 17.3 17.3 17.4 17.5 17.6 17.7 17.8 17.8 17.9 18.0 18.1 18.2 18.3 18.4 18.4 18.5 18.6 18.7 18.8 18.9 19.0 19.0 19.1 19.2 19.3 19.4 19.5 19.6 19.6 19.7 19.8 19.9 20.0 20.1 20.2 20.2 20.3 20.4 20.5 20.6 20.7 20.8 20.8 20.9 21.0 21.1 21.2 21.3 21.3 21.4 21.5 21.6 21.7 21.8 21.9 21.9 22.0 22.1 22.2 22.3 22.4 22.5 22.5 22.6 22.7 22.8 22.9 23.0 23.1 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.7 23.8 23.9 24.0 24.1 24.2 24.3 24.3 24.4 24.5 24.6 24.7 24.8 24.9 24.9 25.0 25.1 25.2 25.3 25.4 25.4 25.5 25.6 25.7 25.8 25.9 26.0 26.0 26.1 26.2 26.3 26.4 26.5 26.6 26.6 26.7 26.8 26.9 27.0 27.1 27.2 27.2 27.3 27.4 27.5 27.6 27.7 27.8 27.8 27.9 28.0 28.1 28.2 28.3 28.4 28.4 28.5 28.6 28.7 28.8 28.9 28.9 29.0 29.1 29.2 29.3 29.4 29.5 29.5 29.6 29.7 29.8 29.9 30.0 30.1 30.1 30.2 30.3 30.4 30.5 30.6 30.7 30.7 30.8 30.9 31.0 31.1 31.2 31.3 31.3 31.4 31.5 31.6 31.7 31.8 31.9 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.5 32.6 32.7 32.8 32.9 33.0 33.0 33.1 33.2 33.3 33.4 33.5 33.6 33.6 33.7 33.8 33.9 34.0 34.1 34.2 34.2 34.3 34.4 34.5 34.6 34.7 34.8 34.8 34.9 35.0 35.1 35.2 35.3 35.4 35.4 35.5 35.6 35.7 35.8 35.9 36.0 36.0 36.1 36.2 36.3 36.4 36.5 36.5 36.6 36.7 36.8 36.9 37.0 37.1 37.1 37.2 37.3 37.4 37.5 37.6 37.7 37.7 37.8 37.9 38.0 38.1 38.2 38.3 38.3 38.4 38.5 38.6 38.7 38.8 38.9 38.9 39.0 39.1 39.2 39.3 39.4 39.5 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.1 40.2 40.3 40.4 40.5 40.6 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.2 41.3 41.4 41.5 41.6 41.7 41.8 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.4 42.5 42.6 42.7 42.8 42.9 43.0 43.0 43.1 43.2 43.3 43.4 43.5 43.6 43.6 43.7 43.8 43.9 44.0 44.1 44.2 44.2 44.3 44.4 44.5 44.6 44.7 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.3 45.4 45.5 45.6 45.7 45.8 45.9 45.9 46.0 46.1 46.2 46.3 46.4 46.5 46.5 46.6 46.7 46.8 46.9 47.0 47.1 47.1 47.2 47.3 47.4 47.5 47.6 47.7 47.7 47.8 47.9 48.0 48.1 48.2 48.2 48.3 48.4 48.5 48.6 48.7 48.8 48.8 48.9 49.0 49.1 49.2 49.3 49.4 49.4 49.5 49.6 49.7 49.8 49.9 50.0 50.0 50.1 50.2 50.3 50.4 50.5 50.6 50.6 50.7 50.8 50.9 51.0 51.1 51.2 51.2 51.3 51.4 51.5 51.6 51.7 51.8 51.8 51.9 52.0 52.1 52.2 52.3 52.3 52.4 52.5 52.6 52.7 52.8 52.9 52.9 53.0 53.1 53.2 53.3 53.4 53.5 53.5 53.6 53.7 53.8 53.9 54.0 54.1 54.1 54.2 54.3 54.4 54.5 54.6 54.7 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.3 55.4 55.5 55.6 55.7 55.8 55.8 55.9 56.0 56.1 56.2 56.3 56.4 56.4 56.5 56.6 56.7 56.8 56.9 57.0 57.0 57.1 57.2 57.3 57.4 57.5 57.6 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.2 58.3 58.4 58.5 58.6 58.7 58.8 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.4 59.5 59.6 59.7 59.8 59.9 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.5 60.6 60.7 60.8 60.9 61.0 61.1 61.1 61.2 61.3 61.4 61.5 61.6 61.7 61.7 61.8 61.9 62.0 62.1 62.2 62.3 62.3 62.4 62.5 62.6 62.7 62.8 62.9 62.9 63.0 63.1 63.2 63.3 63.4 63.5 63.5 63.6 63.7 63.8 63.9 64.0 64.0 64.1 64.2 64.3 64.4 64.5 64.6 64.6 64.7 64.8 64.9 65.0 65.1 65.2 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.8 65.9 66.0 66.1 66.2 66.3 66.4 66.4 66.5 66.6 66.7 66.8 66.9 67.0 67.0 67.1 67.2 67.3 67.4 67.5 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.1 68.2 68.3 68.4 68.5 68.6 68.7 68.7 68.8 68.9 69.0 69.1 69.2 69.3 69.3 69.4 69.5 69.6 69.7 69.8 69.9 69.9 70.0 70.1 70.2 70.3 70.4 70.5 70.5 70.6 70.7 70.8 70.9 71.0 71.1 71.1 71.2 71.3 71.4 71.5 71.6 71.6 71.7 71.8 71.9 72.0 72.1 72.2 72.2 72.3 72.4 72.5 72.6 72.7 72.8 72.8 72.9 73.0 73.1 73.2 73.3 73.4 73.4 73.5 73.6 73.7 73.8 73.9 74.0 74.0 74.1 74.2 74.3 74.4 74.5 74.6 74.6 74.7 74.8 74.9 75.0 75.1 75.1 75.2 75.3 75.4 75.5 75.6 75.7 75.7 75.8 75.9 76.0 76.1 76.2 76.3 76.3 76.4 76.5 76.6 76.7 76.8 76.9 76.9 77.0 77.1 77.2 77.3 77.4 77.5 77.5 77.6 77.7 77.8 77.9 78.0 78.1 78.1 78.2 78.3 78.4 78.5 78.6 78.7 78.7 78.8 78.9 79.0 79.1 79.2 79.2 79.3 79.4 79.5 79.6 79.7 79.8 79.8 79.9 80.0 80.1 80.2 80.3 80.4 80.4 80.5 80.6 80.7 80.8 80.9 81.0 81.0 81.1 81.2 81.3 81.4 81.5 81.6 81.6 81.7 81.8 81.9 82.0 82.1 82.2 82.2 82.3 82.4 82.5 82.6 82.7 82.7 82.8 82.9 83.0 83.1 83.2 83.3 83.3 83.4 83.5 83.6 83.7 83.8 83.9 83.9 84.0 84.1 84.2 84.3 84.4 84.5 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.1 85.2 85.3 85.4 85.5 85.6 85.7 85.7 85.8 85.9 86.0 86.1 86.2 86.3 86.3 86.4 86.5 86.6 86.7 86.8 86.8 86.9 87.0 87.1 87.2 87.3 87.4 87.4 87.5 87.6 87.7 87.8 87.9 88.0 88.0 88.1 88.2 88.3 88.4 88.5 88.6 88.6 88.7 88.8 88.9 89.0 89.1 89.2 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.8 89.9 90.0 90.1 90.2 90.3 90.4 90.4 90.5 90.6 90.7 90.8 90.9 90.9 91.0 91.1 91.2 91.3 91.4 91.5 91.5 91.6 91.7 91.8 91.9 92.0 92.1 92.1 92.2 92.3 92.4 92.5 92.6 92.7 92.7 92.8 92.9 93.0 93.1 93.2 93.3 93.3 93.4 93.5 93.6 93.7 93.8 93.9 93.9 94.0 94.1 94.2 94.3 94.4 94.4 94.5 94.6 94.7 94.8 94.9 95.0 95.0 95.1 95.2 95.3 95.4 95.5 95.6 95.6 95.7 95.8 95.9 96.0 96.1 96.2 96.2 96.3 96.4 96.5 96.6 96.7 96.8 96.8 96.9 97.0 97.1 97.2 97.3 97.4 97.4 97.5 97.6 97.7 97.8 97.9 98.0 98.0 98.1 98.2 98.3 98.4 98.5 98.5 98.6 98.7 98.8 98.9 99.0 99.1 99.1 99.2 99.3 99.4 99.5 99.6 99.7 99.7 99.8 99.9 -found 55 predictions from path traversal Error with prediction: GlimmerHMM lend_intergenic: 90390, rend_intergenic: 90387 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 19243, rend_intergenic: 2071 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 21707, rend_intergenic: 19373 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 29997, rend_intergenic: 21713 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 34892, rend_intergenic: 30888 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 48047, rend_intergenic: 45632 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 57231, rend_intergenic: 48711 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 60605, rend_intergenic: 57231 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 64259, rend_intergenic: 61053 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75235, rend_intergenic: 64474 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 91935, rend_intergenic: 75250 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 95316, rend_intergenic: 92640 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 102994, rend_intergenic: 95446 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 145095, rend_intergenic: 132071 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 169173, rend_intergenic: 155319 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 180350, rend_intergenic: 176900 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 195636, rend_intergenic: 185061 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 199861, rend_intergenic: 197293 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 227870, rend_intergenic: 225430 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 236469, rend_intergenic: 230095 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 269057, rend_intergenic: 268667 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 272427, rend_intergenic: 269651 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 34 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 13146 -exon list size: 51 building trellis 1.9 3.8 5.7 7.5 9.4 11.3 13.2 15.1 17.0 18.9 20.8 22.6 24.5 26.4 28.3 30.2 32.1 34.0 35.8 37.7 39.6 41.5 43.4 45.3 47.2 49.1 50.9 52.8 54.7 56.6 58.5 60.4 62.3 64.2 66.0 67.9 69.8 71.7 73.6 75.5 77.4 79.2 81.1 83.0 84.9 86.8 88.7 90.6 92.5 94.3 96.2 98.1 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support