-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_5/scaffold_5_17426499-17611358

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.23166_t
Valid prediction for GeneMark_model.23182_t
Valid prediction for snap_scaffold_5-snap.3300-T1
Valid prediction for GlimmerHMM_glimmerT_13828-T1
Valid prediction for snap_scaffold_5-snap.3271-T1
Valid prediction for Augustus_model.g9251.t1
Valid prediction for GlimmerHMM_glimmerT_13843-T1
Valid prediction for snap_scaffold_5-snap.3287-T1
Valid prediction for snap_scaffold_5-snap.3280-T1
Valid prediction for snap_scaffold_5-snap.3281-T1
Valid prediction for GeneMark_model.23174_t
Valid prediction for GeneMark_model.23142_t
Valid prediction for snap_scaffold_5-snap.3276-T1
Valid prediction for GeneMark_model.23209_t
Valid prediction for snap_scaffold_5-snap.3289-T1
Valid prediction for GeneMark_model.23162_t
Valid prediction for GeneMark_model.23200_t
Valid prediction for GeneMark_model.23152_t
Valid prediction for GlimmerHMM_glimmerT_13841-T1
Valid prediction for snap_scaffold_5-snap.3296-T1
Valid prediction for Augustus_model.g9245.t1
Valid prediction for GlimmerHMM_glimmerT_13844-T1
Valid prediction for GeneMark_model.23187_t
Valid prediction for Augustus_model.g9247.t1
Valid prediction for GeneMark_model.23195_t
Valid prediction for GeneMark_model.23218_t
Valid prediction for GeneMark_model.23189_t
Valid prediction for snap_scaffold_5-snap.3263-T1
Valid prediction for GeneMark_model.23222_t
Valid prediction for Augustus_model.g9242.t1
Valid prediction for snap_scaffold_5-snap.3270-T1
Valid prediction for snap_scaffold_5-snap.3273-T1
Valid prediction for snap_scaffold_5-snap.3293-T1
Valid prediction for GeneMark_model.23214_t
Valid prediction for GeneMark_model.23216_t
Valid prediction for GeneMark_model.23171_t
Valid prediction for GeneMark_model.23212_t
Valid prediction for snap_scaffold_5-snap.3265-T1
Valid prediction for snap_scaffold_5-snap.3274-T1
Valid prediction for GlimmerHMM_glimmerT_13825-T1
Valid prediction for GeneMark_model.23172_t
Valid prediction for GeneMark_model.23180_t
Valid prediction for Augustus_model.g9243.t1
Valid prediction for GeneMark_model.23205_t
Valid prediction for GlimmerHMM_glimmerT_13827-T1
Valid prediction for snap_scaffold_5-snap.3295-T1
Valid prediction for GlimmerHMM_glimmerT_13834-T1
Valid prediction for snap_scaffold_5-snap.3288-T1
Valid prediction for Augustus_model.g9246.t1
Valid prediction for GeneMark_model.23160_t
Valid prediction for snap_scaffold_5-snap.3269-T1
Valid prediction for GlimmerHMM_glimmerT_13849-T1
Valid prediction for GeneMark_model.23224_t
Valid prediction for GeneMark_model.23168_t
Valid prediction for snap_scaffold_5-snap.3286-T1
Valid prediction for GeneMark_model.23169_t
Valid prediction for GeneMark_model.23143_t
Valid prediction for GlimmerHMM_glimmerT_13835-T1
Valid prediction for GeneMark_model.23191_t
Valid prediction for GeneMark_model.23202_t
Valid prediction for GeneMark_model.23204_t
Valid prediction for GeneMark_model.23220_t
Valid prediction for GlimmerHMM_glimmerT_13821-T1
Valid prediction for GeneMark_model.23176_t
Valid prediction for snap_scaffold_5-snap.3283-T1
Valid prediction for GlimmerHMM_glimmerT_13848-T1
Valid prediction for GlimmerHMM_glimmerT_13830-T1
Valid prediction for snap_scaffold_5-snap.3299-T1
Valid prediction for GeneMark_model.23154_t
Valid prediction for GeneMark_model.23193_t
Valid prediction for GeneMark_model.23197_t
Valid prediction for GeneMark_model.23155_t
Couldn't classify 183765, 184757
Sorry, prediction pasa_asmbl_44842.p1 fails validation.
(ACC)	 AC	183765-184757	TT	TGT
Valid prediction for GeneMark_model.23184_t
Valid prediction for GeneMark_model.23186_t
Valid prediction for Augustus_model.g9241.t1
Valid prediction for Augustus_model.g9254.t1
Valid prediction for GeneMark_model.23156_t
Valid prediction for GeneMark_model.23145_t
Valid prediction for GlimmerHMM_glimmerT_13823-T1
Valid prediction for GeneMark_model.23207_t
Valid prediction for GlimmerHMM_glimmerT_13847-T1
Valid prediction for snap_scaffold_5-snap.3291-T1
Valid prediction for GeneMark_model.23210_t
Valid prediction for Augustus_model.g9253.t1
Valid prediction for Augustus_model.g9239.t1
Valid prediction for snap_scaffold_5-snap.3261-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.23173_t
Valid prediction for GeneMark_model.23211_t
Valid prediction for GeneMark_model.23178_t
Valid prediction for GeneMark_model.23167_t
Valid prediction for GlimmerHMM_glimmerT_13850-T1
Valid prediction for snap_scaffold_5-snap.3297-T1
Valid prediction for GeneMark_model.23149_t
Valid prediction for GeneMark_model.23199_t
Valid prediction for GlimmerHMM_glimmerT_13826-T1
Valid prediction for Augustus_model.g9240.t1
Valid prediction for snap_scaffold_5-snap.3277-T1
Valid prediction for GeneMark_model.23215_t
Valid prediction for snap_scaffold_5-snap.3298-T1
Valid prediction for GeneMark_model.23217_t
Valid prediction for GeneMark_model.23157_t
Valid prediction for GlimmerHMM_glimmerT_13832-T1
Valid prediction for GeneMark_model.23192_t
Valid prediction for GeneMark_model.23179_t
Valid prediction for GeneMark_model.23208_t
Valid prediction for GlimmerHMM_glimmerT_13840-T1
Valid prediction for GeneMark_model.23163_t
Valid prediction for GeneMark_model.23196_t
Valid prediction for GlimmerHMM_glimmerT_13831-T1
Valid prediction for snap_scaffold_5-snap.3262-T1
Valid prediction for GeneMark_model.23188_t
Valid prediction for GeneMark_model.23165_t
Valid prediction for snap_scaffold_5-snap.3272-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.23148_t
Valid prediction for snap_scaffold_5-snap.3268-T1
Valid prediction for GlimmerHMM_glimmerT_13836-T1
Valid prediction for snap_scaffold_5-snap.3294-T1
Valid prediction for GeneMark_model.23219_t
Valid prediction for GeneMark_model.23144_t
Valid prediction for snap_scaffold_5-snap.3266-T1
Valid prediction for snap_scaffold_5-snap.3278-T1
Valid prediction for snap_scaffold_5-snap.3275-T1
Valid prediction for snap_scaffold_5-snap.3279-T1
Valid prediction for GlimmerHMM_glimmerT_13846-T1
Valid prediction for GlimmerHMM_glimmerT_13839-T1
Valid prediction for snap_scaffold_5-snap.3282-T1
Valid prediction for snap_scaffold_5-snap.3290-T1
Valid prediction for Augustus_model.g9244.t1
Valid prediction for GlimmerHMM_glimmerT_13837-T1
Valid prediction for GlimmerHMM_glimmerT_13822-T1
Valid prediction for snap_scaffold_5-snap.3267-T1
Valid prediction for GeneMark_model.23206_t
Valid prediction for GeneMark_model.23201_t
Valid prediction for Augustus_model.g9252.t1
Valid prediction for GlimmerHMM_glimmerT_13842-T1
Valid prediction for GeneMark_model.23183_t
Valid prediction for GlimmerHMM_glimmerT_13833-T1
Valid prediction for GeneMark_model.23161_t
Valid prediction for GlimmerHMM_glimmerT_13845-T1
Valid prediction for GlimmerHMM_glimmerT_13824-T1
Valid prediction for GeneMark_model.23150_t
Valid prediction for GeneMark_model.23164_t
Valid prediction for GeneMark_model.23190_t
Valid prediction for Augustus_model.g9248.t1
Valid prediction for GeneMark_model.23153_t
Valid prediction for Augustus_model.g9250.t1
Valid prediction for GeneMark_model.23223_t
Valid prediction for GlimmerHMM_glimmerT_13829-T1
Valid prediction for GeneMark_model.23159_t
Valid prediction for GeneMark_model.23213_t
Valid prediction for GeneMark_model.23151_t
Valid prediction for GeneMark_model.23158_t
Valid prediction for GeneMark_model.23203_t
Valid prediction for GeneMark_model.23175_t
Valid prediction for GlimmerHMM_glimmerT_13838-T1
Valid prediction for GeneMark_model.23194_t
Valid prediction for GeneMark_model.23221_t
Valid prediction for snap_scaffold_5-snap.3285-T1
Valid prediction for snap_scaffold_5-snap.3264-T1
Valid prediction for Augustus_model.g9249.t1
Valid prediction for GeneMark_model.23146_t
Valid prediction for GeneMark_model.23225_t
Valid prediction for GeneMark_model.23181_t
Valid prediction for GeneMark_model.23147_t
Valid prediction for snap_scaffold_5-snap.3284-T1
Valid prediction for GeneMark_model.23170_t
Valid prediction for GeneMark_model.23185_t
Valid prediction for snap_scaffold_5-snap.3292-T1
Valid prediction for GeneMark_model.23198_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5176, rend_intergenic: 4407  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10768, rend_intergenic: 5586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34639, rend_intergenic: 20791  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48545, rend_intergenic: 34900  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54029, rend_intergenic: 52320  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62989, rend_intergenic: 55219  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63119, rend_intergenic: 63020  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66030, rend_intergenic: 64442  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76357, rend_intergenic: 67004  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81241, rend_intergenic: 77831  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81752, rend_intergenic: 81369  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87355, rend_intergenic: 81855  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92898, rend_intergenic: 87748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117623, rend_intergenic: 100848  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129052, rend_intergenic: 126121  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134938, rend_intergenic: 134338  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138931, rend_intergenic: 135455  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145366, rend_intergenic: 140138  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169545, rend_intergenic: 152097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179412, rend_intergenic: 169862  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 184860
-exon list size: 953


building trellis

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69.7    
69.8    
69.9    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 52 predictions from path traversal
Error with prediction: snap lend_intergenic: 5176, rend_intergenic: 4407  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10768, rend_intergenic: 5586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34639, rend_intergenic: 20791  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48545, rend_intergenic: 34900  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54029, rend_intergenic: 52320  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62989, rend_intergenic: 55219  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63119, rend_intergenic: 63020  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66030, rend_intergenic: 64442  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76357, rend_intergenic: 67004  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81241, rend_intergenic: 77831  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81752, rend_intergenic: 81369  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87355, rend_intergenic: 81855  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92898, rend_intergenic: 87748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117623, rend_intergenic: 100848  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129052, rend_intergenic: 126121  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134938, rend_intergenic: 134338  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138931, rend_intergenic: 135455  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145366, rend_intergenic: 140138  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169545, rend_intergenic: 152097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179412, rend_intergenic: 169862  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support