-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_5/scaffold_5_15227017-15450027

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_5-snap.2811-T1
Valid prediction for Augustus_model.g9029.t1
Valid prediction for snap_scaffold_5-snap.2821-T1
Valid prediction for GeneMark_model.22630_t
Couldn't classify 76192, 76243
Sorry, prediction pasa_asmbl_44651.p1 fails validation.
(CCC)	 TC	76192-76243	GT	AGG
(CCC)	 AG	76380-76443	GT	AGG
(CGT)	 AG	76539-76577	GT	CTG
(GAC)	 AG	76715-76799	GT	AGG
(CGG)	 AG	76952-77095	GT	AGG
(GCG)	 AG	77358-77489	GT	AGG
(GTG)	 AG	77684-77887	GT	CGG
(GTG)	 AG	78123-78202	GT	CTG
(GCA)	 AG	78471-78555	GT	ATG
(GAG)	 AG	78639-78734	GT	AAG
(AAA)	 AG	78822-78884	AA	GAA
-recovered pasa_asmbl_44651.p1, terminal, 78822, 78884
-recovered pasa_asmbl_44651.p1, internal, 76380, 76443
-recovered pasa_asmbl_44651.p1, internal, 76539, 76577
-recovered pasa_asmbl_44651.p1, internal, 76715, 76799
-recovered pasa_asmbl_44651.p1, internal, 76952, 77095
-recovered pasa_asmbl_44651.p1, internal, 77358, 77489
-recovered pasa_asmbl_44651.p1, internal, 77684, 77887
-recovered pasa_asmbl_44651.p1, internal, 78123, 78202
-recovered pasa_asmbl_44651.p1, internal, 78471, 78555
-recovered pasa_asmbl_44651.p1, internal, 78639, 78734
Valid prediction for pasa_asmbl_44650.p1
Valid prediction for snap_scaffold_5-snap.2814-T1
Valid prediction for CodingQuarry_transcript_52248-T1
Valid prediction for GlimmerHMM_glimmerT_13488-T1
Valid prediction for GeneMark_model.22672_t
Valid prediction for Augustus_model.g9022.t1
Valid prediction for GeneMark_model.22636_t
Valid prediction for GlimmerHMM_glimmerT_13492-T1
Valid prediction for snap_scaffold_5-snap.2833-T1
Valid prediction for snap_scaffold_5-snap.2835-T1
Valid prediction for Augustus_model.g9034.t1
Valid prediction for GlimmerHMM_glimmerT_13487-T1
Valid prediction for GeneMark_model.22670_t
Valid prediction for Augustus_model.g9024.t1
Valid prediction for GlimmerHMM_glimmerT_13497-T1
Valid prediction for GlimmerHMM_glimmerT_13480-T1
Valid prediction for GeneMark_model.22666_t
Valid prediction for GeneMark_model.22675_t
Valid prediction for Augustus_model.g9030.t1
Valid prediction for snap_scaffold_5-snap.2829-T1
Couldn't classify 184023, 184123
Couldn't classify 185771, 185896
Sorry, prediction pasa_asmbl_44656.p1 fails validation.
(AGC)	 CC	184023-184123	GT	AAG
(GTG)	 AG	184297-184373	GT	AAG
(GCA)	 AG	184481-184574	GT	GGG
(GGC)	 AG	185468-185612	GT	AGG
(CCC)	 AG	185771-185896	CC	ACC
-recovered pasa_asmbl_44656.p1, internal, 184297, 184373
-recovered pasa_asmbl_44656.p1, internal, 184481, 184574
-recovered pasa_asmbl_44656.p1, internal, 185468, 185612
Valid prediction for GeneMark_model.22647_t
Valid prediction for GeneMark_model.22628_t
Valid prediction for GlimmerHMM_glimmerT_13489-T1
Valid prediction for GeneMark_model.22683_t
Valid prediction for snap_scaffold_5-snap.2839-T1
Valid prediction for Augustus_model.g9018.t1
Valid prediction for GeneMark_model.22658_t
Valid prediction for GeneMark_model.22668_t
Valid prediction for snap_scaffold_5-snap.2813-T1
Valid prediction for GeneMark_model.22645_t
Couldn't classify 180394, 180421
Couldn't classify 181120, 181215
Sorry, prediction pasa_asmbl_44654.p2 fails validation.
(AAG)	 CC	180394-180421	GT	CAG
(GCC)	 AG	180557-180837	GT	AGG
(ATC)	 AG	181120-181215	CA	CCC
-recovered pasa_asmbl_44654.p2, internal, 180557, 180837
Valid prediction for snap_scaffold_5-snap.2822-T1
Valid prediction for snap_scaffold_5-snap.2842-T1
Valid prediction for GeneMark_model.22654_t
Valid prediction for GlimmerHMM_glimmerT_13499-T1
Valid prediction for GeneMark_model.22648_t
Valid prediction for snap_scaffold_5-snap.2827-T1
Valid prediction for HiQ_model.g9023.t1
Valid prediction for GlimmerHMM_glimmerT_13482-T1
Valid prediction for GeneMark_model.22644_t
Valid prediction for Augustus_model.g9032.t1
Valid prediction for GlimmerHMM_glimmerT_13500-T1
Valid prediction for CodingQuarry_transcript_52250-T1
Valid prediction for GeneMark_model.22664_t
Valid prediction for GeneMark_model.22656_t
Valid prediction for GeneMark_model.22663_t
Valid prediction for Augustus_model.g9021.t1
Valid prediction for Augustus_model.g9028.t1
Valid prediction for GeneMark_model.22681_t
Valid prediction for snap_scaffold_5-snap.2847-T1
Valid prediction for GlimmerHMM_glimmerT_13484-T1
Valid prediction for GeneMark_model.22640_t
Valid prediction for GlimmerHMM_glimmerT_13490-T1
Valid prediction for snap_scaffold_5-snap.2823-T1
Valid prediction for GlimmerHMM_glimmerT_13502-T1
Valid prediction for snap_scaffold_5-snap.2836-T1
Valid prediction for GeneMark_model.22677_t
Valid prediction for GeneMark_model.22642_t
Valid prediction for GeneMark_model.22650_t
Valid prediction for GeneMark_model.22660_t
Couldn't classify 182777, 182879
Couldn't classify 183492, 183649
Sorry, prediction pasa_asmbl_44655.p1 fails validation.
(GCC)	 AG	182777-182879	GT	AGG
(GTT)	 AG	183187-183348	GT	CAG
(CCA)	 AG	183492-183649	GA	GAG
-recovered pasa_asmbl_44655.p1, internal, 182777, 182879
-recovered pasa_asmbl_44655.p1, internal, 183187, 183348
Valid prediction for snap_scaffold_5-snap.2819-T1
Valid prediction for GeneMark_model.22634_t
Valid prediction for GlimmerHMM_glimmerT_13498-T1
Valid prediction for GeneMark_model.22678_t
Valid prediction for snap_scaffold_5-snap.2824-T1
Valid prediction for GeneMark_model.22661_t
Valid prediction for GeneMark_model.22626_t
Valid prediction for snap_scaffold_5-snap.2817-T1
Valid prediction for Augustus_model.g9027.t1
Valid prediction for GlimmerHMM_glimmerT_13485-T1
Valid prediction for snap_scaffold_5-snap.2828-T1
Valid prediction for GeneMark_model.22674_t
Valid prediction for GeneMark_model.22638_t
Valid prediction for GlimmerHMM_glimmerT_13486-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_5-snap.2845-T1
Valid prediction for snap_scaffold_5-snap.2812-T1
Valid prediction for GeneMark_model.22655_t
Valid prediction for GeneMark_model.22652_t
Valid prediction for Augustus_model.g9026.t1
Couldn't classify 18165, 18248
Couldn't classify 26774, 26896
Sorry, prediction pasa_asmbl_46052.p1 fails validation.
(AAT)	 AG	18165-18248	GT	AGG
(GAG)	 AG	18393-18473	GT	AGG
(AAG)	 AG	18651-18727	GT	GGG
(GTG)	 AG	20839-20922	GT	ATG
(GCT)	 AG	21422-21568	GT	CGG
(TTA)	 AG	22907-23015	GT	AGG
(TAT)	 AG	23311-23387	GT	CGG
(GAC)	 AG	24073-24166	GT	AGG
(GTG)	 AG	25339-25413	GT	TGG
(GTG)	 AG	25507-25617	GT	AGG
(AAA)	 AG	25751-25900	GT	ATG
(GTG)	 AG	26438-26539	GT	GGG
(GAG)	 AG	26774-26896	AC	GGA
-recovered pasa_asmbl_46052.p1, internal, 18165, 18248
-recovered pasa_asmbl_46052.p1, internal, 18393, 18473
-recovered pasa_asmbl_46052.p1, internal, 18651, 18727
-recovered pasa_asmbl_46052.p1, internal, 20839, 20922
-recovered pasa_asmbl_46052.p1, internal, 21422, 21568
-recovered pasa_asmbl_46052.p1, internal, 22907, 23015
-recovered pasa_asmbl_46052.p1, internal, 23311, 23387
-recovered pasa_asmbl_46052.p1, internal, 24073, 24166
-recovered pasa_asmbl_46052.p1, internal, 25339, 25413
-recovered pasa_asmbl_46052.p1, internal, 25507, 25617
-recovered pasa_asmbl_46052.p1, internal, 25751, 25900
-recovered pasa_asmbl_46052.p1, internal, 26438, 26539
Valid prediction for GlimmerHMM_glimmerT_13494-T1
Valid prediction for GlimmerHMM_glimmerT_13496-T1
Valid prediction for snap_scaffold_5-snap.2838-T1
Couldn't classify 133641, 133698
Sorry, prediction pasa_asmbl_46044.p1 fails validation.
(TAT)	 GC	133641-133698	GT	AGG
(GGT)	 AG	134032-134123	GT	AGG
(CAA)	 AG	136299-136456	GT	AGG
(GAT)	 AG	136926-137005	GT	CGG
(TTC)	 AG	137207-137316	GT	CGG
(GGA)	 AG	137885-137931	GT	GGG
(ATT)	 AG	138210-138303	GT	AGG
(GTT)	 AG	138633-138683	GT	CGG
(GGG)	 AG	138805-138915	GT	CGG
(TAC)	 AG	139200-139280	GT	AGG
(GAA)	 AG	139413-139487	GG	GAG
-recovered pasa_asmbl_46044.p1, terminal, 139413, 139487
-recovered pasa_asmbl_46044.p1, internal, 134032, 134123
-recovered pasa_asmbl_46044.p1, internal, 136299, 136456
-recovered pasa_asmbl_46044.p1, internal, 136926, 137005
-recovered pasa_asmbl_46044.p1, internal, 137207, 137316
-recovered pasa_asmbl_46044.p1, internal, 137885, 137931
-recovered pasa_asmbl_46044.p1, internal, 138210, 138303
-recovered pasa_asmbl_46044.p1, internal, 138633, 138683
-recovered pasa_asmbl_46044.p1, internal, 138805, 138915
-recovered pasa_asmbl_46044.p1, internal, 139200, 139280
Valid prediction for snap_scaffold_5-snap.2826-T1
Valid prediction for GeneMark_model.22627_t
Valid prediction for GeneMark_model.22671_t
Valid prediction for snap_scaffold_5-snap.2841-T1
Valid prediction for GlimmerHMM_glimmerT_13483-T1
Valid prediction for snap_scaffold_5-snap.2840-T1
Valid prediction for HiQ_model.g9033.t1
Valid prediction for GeneMark_model.22657_t
Valid prediction for GeneMark_model.22625_t
Valid prediction for GeneMark_model.22659_t
Valid prediction for GlimmerHMM_glimmerT_13501-T1
Valid prediction for GeneMark_model.22633_t
Couldn't classify 213278, 213418
Sorry, prediction pasa_asmbl_46302.p1 fails validation.
(ACC)	 AG	213278-213418	GT	AGG
(GGC)	 AG	213968-214109	GT	AGG
(CGG)	 AG	215478-215641	GT	CGG
(AAC)	 AG	216379-216555	GT	TGG
(ATG)	 AG	216854-217058	GT	AGG
(ACC)	 AG	217734-217892	GT	GGG
(GAG)	 AG	218120-218496	AT	GAA
-recovered pasa_asmbl_46302.p1, initial, 216854, 217058
-recovered pasa_asmbl_46302.p1, terminal, 218120, 218496
-recovered pasa_asmbl_46302.p1, internal, 213278, 213418
-recovered pasa_asmbl_46302.p1, internal, 213968, 214109
-recovered pasa_asmbl_46302.p1, internal, 215478, 215641
-recovered pasa_asmbl_46302.p1, internal, 216379, 216555
-recovered pasa_asmbl_46302.p1, internal, 216854, 217058
-recovered pasa_asmbl_46302.p1, internal, 217734, 217892
Valid prediction for GeneMark_model.22662_t
Valid prediction for GeneMark_model.22631_t
Valid prediction for CodingQuarry_transcript_52251-T1
Valid prediction for snap_scaffold_5-snap.2830-T1
Valid prediction for GeneMark_model.22646_t
Valid prediction for Augustus_model.g9020.t1
Valid prediction for GlimmerHMM_glimmerT_13495-T1
Valid prediction for GlimmerHMM_glimmerT_13503-T1
Valid prediction for snap_scaffold_5-snap.2837-T1
Valid prediction for GlimmerHMM_glimmerT_13491-T1
Valid prediction for GeneMark_model.22676_t
Valid prediction for GlimmerHMM_glimmerT_13481-T1
Valid prediction for GeneMark_model.22653_t
Valid prediction for GlimmerHMM_glimmerT_13493-T1
Valid prediction for GeneMark_model.22632_t
Couldn't classify 27532, 27601
Sorry, prediction pasa_asmbl_46046.p1 fails validation.
(CCC)	 CA	27532-27601	GT	TGG
(CTA)	 AG	27691-27815	GT	AGG
(GAA)	 AG	28018-28220	GT	AAG
(GTT)	 AG	28332-28635	GT	AAG
(ATC)	 AG	28730-28810	GT	TGG
(CTG)	 AG	28943-29072	GT	AGG
(TGT)	 AG	29254-29414	GT	AGG
(GAG)	 AG	29590-29691	GT	AGG
(GAC)	 AG	30376-30468	GT	AGG
(GTC)	 AG	30618-30741	GT	AGG
(ATC)	 AG	33381-33445	AC	AAA
-recovered pasa_asmbl_46046.p1, terminal, 33381, 33445
-recovered pasa_asmbl_46046.p1, internal, 27691, 27815
-recovered pasa_asmbl_46046.p1, internal, 28018, 28220
-recovered pasa_asmbl_46046.p1, internal, 28332, 28635
-recovered pasa_asmbl_46046.p1, internal, 28730, 28810
-recovered pasa_asmbl_46046.p1, internal, 28943, 29072
-recovered pasa_asmbl_46046.p1, internal, 29254, 29414
-recovered pasa_asmbl_46046.p1, internal, 29590, 29691
-recovered pasa_asmbl_46046.p1, internal, 30376, 30468
-recovered pasa_asmbl_46046.p1, internal, 30618, 30741
Valid prediction for Augustus_model.g9017.t1
Valid prediction for GeneMark_model.22682_t
Valid prediction for GeneMark_model.22649_t
Valid prediction for snap_scaffold_5-snap.2832-T1
Valid prediction for GeneMark_model.22639_t
Valid prediction for snap_scaffold_5-snap.2848-T1
Valid prediction for GeneMark_model.22665_t
Valid prediction for GeneMark_model.22641_t
Valid prediction for snap_scaffold_5-snap.2818-T1
Valid prediction for GeneMark_model.22651_t
Valid prediction for snap_scaffold_5-snap.2844-T1
Valid prediction for GeneMark_model.22629_t
Valid prediction for GeneMark_model.22667_t
Valid prediction for GeneMark_model.22679_t
Valid prediction for snap_scaffold_5-snap.2815-T1
Valid prediction for GeneMark_model.22637_t
Valid prediction for GeneMark_model.22635_t
Valid prediction for snap_scaffold_5-snap.2834-T1
Valid prediction for snap_scaffold_5-snap.2843-T1
Valid prediction for snap_scaffold_5-snap.2825-T1
Valid prediction for Augustus_model.g9019.t1
Valid prediction for GeneMark_model.22680_t
Valid prediction for Augustus_model.g9025.t1
Valid prediction for snap_scaffold_5-snap.2820-T1
Valid prediction for Augustus_model.g9031.t1
Valid prediction for snap_scaffold_5-snap.2816-T1
Valid prediction for snap_scaffold_5-snap.2831-T1
Valid prediction for snap_scaffold_5-snap.2846-T1
Valid prediction for GeneMark_model.22673_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5282, rend_intergenic: 4271  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14493, rend_intergenic: 5932  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35639, rend_intergenic: 15919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39763, rend_intergenic: 38459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92806, rend_intergenic: 84113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96051, rend_intergenic: 95159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112493, rend_intergenic: 110803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124417, rend_intergenic: 120519  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133967, rend_intergenic: 130843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143244, rend_intergenic: 135880  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162950, rend_intergenic: 143748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185908, rend_intergenic: 165365  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204896, rend_intergenic: 202869  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 223011
-exon list size: 767


building trellis

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42.5    
42.7    
42.8    
42.9    
43.0    
43.2    
43.3    
43.4    
43.6    
43.7    
43.8    
44.0    
44.1    
44.2    
44.3    
44.5    
44.6    
44.7    
44.9    
45.0    
45.1    
45.3    
45.4    
45.5    
45.6    
45.8    
45.9    
46.0    
46.2    
46.3    
46.4    
46.6    
46.7    
46.8    
46.9    
47.1    
47.2    
47.3    
47.5    
47.6    
47.7    
47.9    
48.0    
48.1    
48.2    
48.4    
48.5    
48.6    
48.8    
48.9    
49.0    
49.2    
49.3    
49.4    
49.5    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.5    
50.6    
50.7    
50.8    
51.0    
51.1    
51.2    
51.4    
51.5    
51.6    
51.8    
51.9    
52.0    
52.1    
52.3    
52.4    
52.5    
52.7    
52.8    
52.9    
53.1    
53.2    
53.3    
53.4    
53.6    
53.7    
53.8    
54.0    
54.1    
54.2    
54.4    
54.5    
54.6    
54.7    
54.9    
55.0    
55.1    
55.3    
55.4    
55.5    
55.7    
55.8    
55.9    
56.0    
56.2    
56.3    
56.4    
56.6    
56.7    
56.8    
57.0    
57.1    
57.2    
57.3    
57.5    
57.6    
57.7    
57.9    
58.0    
58.1    
58.3    
58.4    
58.5    
58.6    
58.8    
58.9    
59.0    
59.2    
59.3    
59.4    
59.6    
59.7    
59.8    
59.9    
60.1    
60.2    
60.3    
60.5    
60.6    
60.7    
60.9    
61.0    
61.1    
61.2    
61.4    
61.5    
61.6    
61.8    
61.9    
62.0    
62.2    
62.3    
62.4    
62.5    
62.7    
62.8    
62.9    
63.1    
63.2    
63.3    
63.5    
63.6    
63.7    
63.8    
64.0    
64.1    
64.2    
64.4    
64.5    
64.6    
64.8    
64.9    
65.0    
65.1    
65.3    
65.4    
65.5    
65.7    
65.8    
65.9    
66.1    
66.2    
66.3    
66.4    
66.6    
66.7    
66.8    
67.0    
67.1    
67.2    
67.4    
67.5    
67.6    
67.8    
67.9    
68.0    
68.1    
68.3    
68.4    
68.5    
68.7    
68.8    
68.9    
69.1    
69.2    
69.3    
69.4    
69.6    
69.7    
69.8    
70.0    
70.1    
70.2    
70.4    
70.5    
70.6    
70.7    
70.9    
71.0    
71.1    
71.3    
71.4    
71.5    
71.7    
71.8    
71.9    
72.0    
72.2    
72.3    
72.4    
72.6    
72.7    
72.8    
73.0    
73.1    
73.2    
73.3    
73.5    
73.6    
73.7    
73.9    
74.0    
74.1    
74.3    
74.4    
74.5    
74.6    
74.8    
74.9    
75.0    
75.2    
75.3    
75.4    
75.6    
75.7    
75.8    
75.9    
76.1    
76.2    
76.3    
76.5    
76.6    
76.7    
76.9    
77.0    
77.1    
77.2    
77.4    
77.5    
77.6    
77.8    
77.9    
78.0    
78.2    
78.3    
78.4    
78.5    
78.7    
78.8    
78.9    
79.1    
79.2    
79.3    
79.5    
79.6    
79.7    
79.8    
80.0    
80.1    
80.2    
80.4    
80.5    
80.6    
80.8    
80.9    
81.0    
81.1    
81.3    
81.4    
81.5    
81.7    
81.8    
81.9    
82.1    
82.2    
82.3    
82.4    
82.6    
82.7    
82.8    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.7    
83.9    
84.0    
84.1    
84.3    
84.4    
84.5    
84.7    
84.8    
84.9    
85.0    
85.2    
85.3    
85.4    
85.6    
85.7    
85.8    
86.0    
86.1    
86.2    
86.3    
86.5    
86.6    
86.7    
86.9    
87.0    
87.1    
87.3    
87.4    
87.5    
87.6    
87.8    
87.9    
88.0    
88.2    
88.3    
88.4    
88.6    
88.7    
88.8    
88.9    
89.1    
89.2    
89.3    
89.5    
89.6    
89.7    
89.9    
90.0    
90.1    
90.2    
90.4    
90.5    
90.6    
90.8    
90.9    
91.0    
91.2    
91.3    
91.4    
91.5    
91.7    
91.8    
91.9    
92.1    
92.2    
92.3    
92.5    
92.6    
92.7    
92.8    
93.0    
93.1    
93.2    
93.4    
93.5    
93.6    
93.8    
93.9    
94.0    
94.1    
94.3    
94.4    
94.5    
94.7    
94.8    
94.9    
95.1    
95.2    
95.3    
95.4    
95.6    
95.7    
95.8    
96.0    
96.1    
96.2    
96.4    
96.5    
96.6    
96.7    
96.9    
97.0    
97.1    
97.3    
97.4    
97.5    
97.7    
97.8    
97.9    
98.0    
98.2    
98.3    
98.4    
98.6    
98.7    
98.8    
99.0    
99.1    
99.2    
99.3    
99.5    
99.6    
99.7    
99.9    
-found 30 predictions from path traversal
Error with prediction: snap lend_intergenic: 5282, rend_intergenic: 4271  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14493, rend_intergenic: 5932  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35639, rend_intergenic: 15919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39763, rend_intergenic: 38459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92806, rend_intergenic: 84113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96051, rend_intergenic: 95159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112493, rend_intergenic: 110803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124417, rend_intergenic: 120519  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133967, rend_intergenic: 130843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143244, rend_intergenic: 135880  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162950, rend_intergenic: 143748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185908, rend_intergenic: 165365  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204896, rend_intergenic: 202869  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 204842 - 223011
-exon list size: 36


building trellis

2.6    
5.3    
7.9    
10.5    
13.2    
15.8    
18.4    
21.1    
23.7    
26.3    
28.9    
31.6    
34.2    
36.8    
39.5    
42.1    
44.7    
47.4    
50.0    
52.6    
55.3    
57.9    
60.5    
63.2    
65.8    
68.4    
71.1    
73.7    
76.3    
78.9    
81.6    
84.2    
86.8    
89.5    
92.1    
94.7    
97.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 212131 - 223011
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support