-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_5/scaffold_5_14407938-14633481

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_13374-T1
Valid prediction for snap_scaffold_5-snap.2685-T1
Valid prediction for GlimmerHMM_glimmerT_13385-T1
Couldn't classify 90681, 90846
Couldn't classify 95210, 95352
Sorry, prediction pasa_asmbl_44604.p1 fails validation.
(CAC)	 GG	90681-90846	GT	AGG
(TGG)	 AG	90944-91043	GT	ACG
(GGA)	 AG	92959-93057	GT	GAG
(GTG)	 AG	93627-93730	GT	AGG
(GTG)	 AG	94612-94761	GT	GAG
(AGC)	 AG	94866-95021	GT	GGG
(GAA)	 AG	95210-95352	GA	AGG
-recovered pasa_asmbl_44604.p1, internal, 90944, 91043
-recovered pasa_asmbl_44604.p1, internal, 92959, 93057
-recovered pasa_asmbl_44604.p1, internal, 93627, 93730
-recovered pasa_asmbl_44604.p1, internal, 94612, 94761
-recovered pasa_asmbl_44604.p1, internal, 94866, 95021
Valid prediction for GlimmerHMM_glimmerT_13376-T1
Valid prediction for snap_scaffold_5-snap.2668-T1
Valid prediction for GlimmerHMM_glimmerT_13386-T1
Valid prediction for GeneMark_model.22469_t
Valid prediction for snap_scaffold_5-snap.2672-T1
Valid prediction for GlimmerHMM_glimmerT_13369-T1
Valid prediction for GeneMark_model.22460_t
Couldn't classify 111911, 111932
Couldn't classify 112611, 112703
Sorry, prediction pasa_asmbl_44606.p2 fails validation.
(AGT)	 TC	111911-111932	GT	AGG
(AAA)	 AG	112139-112254	GT	AGG
(TTC)	 AG	112338-112451	GT	AGG
(TCC)	 AG	112611-112703	GG	CAG
-recovered pasa_asmbl_44606.p2, internal, 112139, 112254
-recovered pasa_asmbl_44606.p2, internal, 112338, 112451
Valid prediction for GeneMark_model.22480_t
Valid prediction for snap_scaffold_5-snap.2687-T1
Valid prediction for GlimmerHMM_glimmerT_13370-T1
Couldn't classify 186441, 186502
Sorry, prediction pasa_asmbl_44616.p1 fails validation.
(GTT)	 AG	186441-186502	GT	AAG
(ACG)	 AG	186733-186858	GT	GCG
(GGG)	 AG	187749-187892	GT	GAG
(GGG)	 AG	188003-188118	GT	AAG
(ACT)	 AG	188611-188735	GT	AGG
(GAA)	 AG	190080-190151	GT	AGG
(GCT)	 AG	190590-190691	GT	AGG
(ACA)	 AG	191042-191109	GT	AGG
(GTT)	 AG	191229-191358	GT	TGG
(AAC)	 AG	191512-191616	AG	AAA
-recovered pasa_asmbl_44616.p1, terminal, 191512, 191616
-recovered pasa_asmbl_44616.p1, internal, 186441, 186502
-recovered pasa_asmbl_44616.p1, internal, 186733, 186858
-recovered pasa_asmbl_44616.p1, internal, 187749, 187892
-recovered pasa_asmbl_44616.p1, internal, 188003, 188118
-recovered pasa_asmbl_44616.p1, internal, 188611, 188735
-recovered pasa_asmbl_44616.p1, internal, 190080, 190151
-recovered pasa_asmbl_44616.p1, internal, 190590, 190691
-recovered pasa_asmbl_44616.p1, internal, 191042, 191109
-recovered pasa_asmbl_44616.p1, internal, 191229, 191358
Couldn't classify 7520, 7571
Sorry, prediction pasa_asmbl_44598.p1 fails validation.
(AAC)	 AG	7520-7571	GT	TGG
(GGT)	 AG	8908-9002	GT	CTG
(GAT)	 AG	9316-9396	GT	GGG
(GAG)	 AG	9562-9637	GT	TGG
(GGA)	 AG	10089-10165	GT	AGG
(GTG)	 AG	10350-10510	GT	AGG
(TTT)	 AG	10595-10737	GT	AGG
(GGA)	 AG	11528-11640	GT	AGG
(CCC)	 AG	12403-12612	GT	AGG
(GTG)	 AG	14797-14958	GT	GAG
(GAT)	 AG	15474-15566	GT	AGG
(TGT)	 AG	15679-15762	GT	AGG
(GCC)	 AG	16720-16890	GT	AGG
(GTG)	 AG	17007-17105	GT	CTG
(GTG)	 AG	18220-18309	GT	AGG
(GTG)	 AG	18593-18737	GT	GGG
(GGG)	 AG	19018-19082	GT	AAG
(GAA)	 AG	19607-19762	GT	AGG
(GTT)	 AG	20301-20365	GT	GGG
(ATA)	 AG	20723-20831	GT	AGG
(GGT)	 AG	20990-21047	GT	AGG
(GCA)	 AG	22240-22443	GT	CGG
(ATG)	 AG	23404-23540	AC	AGA
-recovered pasa_asmbl_44598.p1, terminal, 23404, 23540
-recovered pasa_asmbl_44598.p1, internal, 7520, 7571
-recovered pasa_asmbl_44598.p1, internal, 8908, 9002
-recovered pasa_asmbl_44598.p1, internal, 9316, 9396
-recovered pasa_asmbl_44598.p1, internal, 9562, 9637
-recovered pasa_asmbl_44598.p1, internal, 10089, 10165
-recovered pasa_asmbl_44598.p1, internal, 10350, 10510
-recovered pasa_asmbl_44598.p1, internal, 10595, 10737
-recovered pasa_asmbl_44598.p1, internal, 11528, 11640
-recovered pasa_asmbl_44598.p1, internal, 12403, 12612
-recovered pasa_asmbl_44598.p1, internal, 14797, 14958
-recovered pasa_asmbl_44598.p1, internal, 15474, 15566
-recovered pasa_asmbl_44598.p1, internal, 15679, 15762
-recovered pasa_asmbl_44598.p1, internal, 16720, 16890
-recovered pasa_asmbl_44598.p1, internal, 17007, 17105
-recovered pasa_asmbl_44598.p1, internal, 18220, 18309
-recovered pasa_asmbl_44598.p1, internal, 18593, 18737
-recovered pasa_asmbl_44598.p1, internal, 19018, 19082
-recovered pasa_asmbl_44598.p1, internal, 19607, 19762
-recovered pasa_asmbl_44598.p1, internal, 20301, 20365
-recovered pasa_asmbl_44598.p1, internal, 20723, 20831
-recovered pasa_asmbl_44598.p1, internal, 20990, 21047
-recovered pasa_asmbl_44598.p1, internal, 22240, 22443
Valid prediction for GeneMark_model.22477_t
Valid prediction for GeneMark_model.22487_t
Valid prediction for Augustus_model.g8947.t1
Valid prediction for snap_scaffold_5-snap.2696-T1
Valid prediction for GeneMark_model.22463_t
Valid prediction for GlimmerHMM_glimmerT_13372-T1
Valid prediction for snap_scaffold_5-snap.2704-T1
Valid prediction for GeneMark_model.22456_t
Couldn't classify 32743, 33305
Couldn't classify 36347, 36386
Sorry, prediction pasa_asmbl_44601.p1 fails validation.
(AGT)	 CC	32743-33305	GT	AGG
(CAT)	 AG	33412-33580	GT	AGG
(TTG)	 AG	36030-36232	GT	ATG
(CAT)	 AG	36347-36386	AT	ACA
-recovered pasa_asmbl_44601.p1, internal, 33412, 33580
-recovered pasa_asmbl_44601.p1, internal, 36030, 36232
Valid prediction for GeneMark_model.22472_t
Valid prediction for GeneMark_model.22462_t
Valid prediction for GeneMark_model.22478_t
Valid prediction for GeneMark_model.22471_t
Valid prediction for GeneMark_model.22464_t
Valid prediction for GeneMark_model.22470_t
Valid prediction for GlimmerHMM_glimmerT_13375-T1
Valid prediction for GlimmerHMM_glimmerT_13383-T1
Valid prediction for GeneMark_model.22483_t
Valid prediction for snap_scaffold_5-snap.2690-T1
Valid prediction for snap_scaffold_5-snap.2673-T1
Valid prediction for snap_scaffold_5-snap.2694-T1
Valid prediction for snap_scaffold_5-snap.2676-T1
Valid prediction for GlimmerHMM_glimmerT_13365-T1
Couldn't classify 95949, 95955
Sorry, prediction pasa_asmbl_44605.p1 fails validation.
(AGA)	 CA	95949-95955	GT	GGG
(GAG)	 AG	96177-96308	GT	AGG
(GCA)	 AG	96441-96649	GC	AGG
-recovered pasa_asmbl_44605.p1, terminal, 96441, 96649
-recovered pasa_asmbl_44605.p1, internal, 96177, 96308
-recovered pasa_asmbl_44605.p1, internal, 96441, 96649
Valid prediction for GlimmerHMM_glimmerT_13373-T1
Valid prediction for snap_scaffold_5-snap.2674-T1
Valid prediction for Augustus_model.g8956.t1
Valid prediction for snap_scaffold_5-snap.2702-T1
Valid prediction for GeneMark_model.22474_t
Valid prediction for HiQ_model.g8949.t1
Valid prediction for HiQ_model.g8938.t1
Valid prediction for snap_scaffold_5-snap.2701-T1
Valid prediction for GlimmerHMM_glimmerT_13379-T1
Valid prediction for snap_scaffold_5-snap.2670-T1
Valid prediction for GlimmerHMM_glimmerT_13364-T1
Valid prediction for Augustus_model.g8944.t1
Valid prediction for GlimmerHMM_glimmerT_13367-T1
Couldn't classify 144258, 144397
Sorry, prediction pasa_asmbl_44613.p2 fails validation.
(TAC)	 TC	144258-144397	GT	AAG
(GTT)	 AG	144526-144580	GT	AGG
(ATC)	 AG	144674-144826	GA	AGG
-recovered pasa_asmbl_44613.p2, terminal, 144674, 144826
-recovered pasa_asmbl_44613.p2, internal, 144526, 144580
Valid prediction for GeneMark_model.22459_t
Couldn't classify 36480, 36519
Couldn't classify 41524, 42245
Sorry, prediction pasa_asmbl_44602.p1 fails validation.
(CAT)	 AA	36480-36519	GT	CTG
(CCC)	 AG	38333-38473	GT	GGG
(ATG)	 AG	41041-41096	GT	CTG
(AGC)	 AG	41189-41321	GT	AGG
(TAC)	 AG	41524-42245	GA	AGG
-recovered pasa_asmbl_44602.p1, initial, 41041, 41096
-recovered pasa_asmbl_44602.p1, internal, 38333, 38473
-recovered pasa_asmbl_44602.p1, internal, 41041, 41096
-recovered pasa_asmbl_44602.p1, internal, 41189, 41321
Valid prediction for snap_scaffold_5-snap.2675-T1
Valid prediction for GlimmerHMM_glimmerT_13366-T1
Valid prediction for snap_scaffold_5-snap.2671-T1
Couldn't classify 129698, 129800
Sorry, prediction pasa_asmbl_44608.p2 fails validation.
(TCG)	 CA	129698-129800	GT	TTG
(TGA)	 AG	129911-130251	AA	GAA
-recovered pasa_asmbl_44608.p2, terminal, 129911, 130251
Valid prediction for Augustus_model.g8940.t1
Valid prediction for GlimmerHMM_glimmerT_13388-T1
Valid prediction for Augustus_model.g8945.t1
Valid prediction for HiQ_model.g8954.t1
Valid prediction for GlimmerHMM_glimmerT_13363-T1
Valid prediction for snap_scaffold_5-snap.2691-T1
Valid prediction for GeneMark_model.22458_t
Valid prediction for Augustus_model.g8946.t1
Valid prediction for snap_scaffold_5-snap.2684-T1
Couldn't classify 142310, 142352
Couldn't classify 143183, 143207
Sorry, prediction pasa_asmbl_44612.p1 fails validation.
(GAC)	 GT	142310-142352	GT	CGG
(GTC)	 AG	142592-142726	GT	AAG
(ATC)	 AG	142834-143032	GT	GAG
(CTA)	 AG	143183-143207	AC	AGA
add_exon() Sorry, pasa_asmbl_44612.p1 142834-143032-terminal-3 is invalid.
-recovered pasa_asmbl_44612.p1, terminal, 142834, 143032
-recovered pasa_asmbl_44612.p1, internal, 142592, 142726
-recovered pasa_asmbl_44612.p1, internal, 142834, 143032
Valid prediction for GeneMark_model.22467_t
Valid prediction for Augustus_model.g8952.t1
Valid prediction for GeneMark_model.22481_t
Valid prediction for snap_scaffold_5-snap.2678-T1
Valid prediction for Augustus_model.g8941.t1
Valid prediction for Augustus_model.g8939.t1
Valid prediction for snap_scaffold_5-snap.2689-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_5-snap.2681-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g8950.t1
Valid prediction for snap_scaffold_5-snap.2707-T1
Valid prediction for snap_scaffold_5-snap.2708-T1
Valid prediction for GlimmerHMM_glimmerT_13384-T1
Valid prediction for GlimmerHMM_glimmerT_13381-T1
Valid prediction for pasa_asmbl_45976.p1
Valid prediction for CodingQuarry_transcript_52221-T1
Valid prediction for Augustus_model.g8943.t1
Valid prediction for GlimmerHMM_glimmerT_13368-T1
Valid prediction for Augustus_model.g8942.t1
Valid prediction for GlimmerHMM_glimmerT_13390-T1
Valid prediction for GlimmerHMM_glimmerT_13371-T1
Valid prediction for GeneMark_model.22484_t
Valid prediction for snap_scaffold_5-snap.2688-T1
Valid prediction for GlimmerHMM_glimmerT_13387-T1
Valid prediction for HiQ_model.g8957.t1
Valid prediction for snap_scaffold_5-snap.2699-T1
Valid prediction for snap_scaffold_5-snap.2698-T1
Valid prediction for CodingQuarry_transcript_52223-T1
Valid prediction for GeneMark_model.22473_t
Valid prediction for HiQ_model.g8955.t1
Valid prediction for GeneMark_model.22479_t
Valid prediction for GeneMark_model.22465_t
Couldn't classify 73953, 74549
Sorry, prediction pasa_asmbl_45977.p1 fails validation.
(TCC)	 TG	73953-74549	CC	ACC
Valid prediction for snap_scaffold_5-snap.2680-T1
Valid prediction for GlimmerHMM_glimmerT_13377-T1
Valid prediction for Augustus_model.g8959.t1
Valid prediction for GeneMark_model.22475_t
Valid prediction for GeneMark_model.22468_t
Valid prediction for snap_scaffold_5-snap.2693-T1
Valid prediction for GeneMark_model.22457_t
Valid prediction for snap_scaffold_5-snap.2706-T1
Valid prediction for snap_scaffold_5-snap.2703-T1
Valid prediction for HiQ_model.g8951.t1
Valid prediction for snap_scaffold_5-snap.2683-T1
Valid prediction for GeneMark_model.22482_t
Valid prediction for GeneMark_model.22486_t
Valid prediction for Augustus_model.g8958.t1
Valid prediction for snap_scaffold_5-snap.2705-T1
Valid prediction for snap_scaffold_5-snap.2669-T1
Valid prediction for pasa_asmbl_45981.p1
Valid prediction for snap_scaffold_5-snap.2695-T1
Valid prediction for GeneMark_model.22476_t
Valid prediction for snap_scaffold_5-snap.2697-T1
Valid prediction for GlimmerHMM_glimmerT_13378-T1
Valid prediction for GeneMark_model.22461_t
Valid prediction for GlimmerHMM_glimmerT_13391-T1
Valid prediction for GeneMark_model.22466_t
Valid prediction for CodingQuarry_transcript_52225-T1
Valid prediction for snap_scaffold_5-snap.2677-T1
Valid prediction for GlimmerHMM_glimmerT_13389-T1
Valid prediction for snap_scaffold_5-snap.2700-T1
Valid prediction for HiQ_model.g8953.t1
Valid prediction for snap_scaffold_5-snap.2679-T1
Couldn't classify 85803, 85954
Sorry, prediction pasa_asmbl_45975.p1 fails validation.
(CAC)	 AC	85803-85954	GT	GGG
(GTA)	 AG	86297-86423	GT	AGG
(CTG)	 AG	86871-86945	GT	AGG
(TCT)	 AG	87042-87235	GT	AGG
(TTC)	 AG	87361-87398	GT	TGG
(ATG)	 AG	87517-87602	GT	GGG
(GTG)	 AG	87715-87938	GT	CTG
(GCT)	 AG	88098-88148	GT	ACG
(CTT)	 AG	88335-88566	GT	AGG
(ATC)	 AG	88711-88926	CA	AAC
add_exon() Sorry, pasa_asmbl_45975.p1 87517-87602-initial-1 is invalid.
-recovered pasa_asmbl_45975.p1, initial, 87517, 87602
add_exon() Sorry, pasa_asmbl_45975.p1 87042-87235-terminal-2 is invalid.
-recovered pasa_asmbl_45975.p1, terminal, 87042, 87235
-recovered pasa_asmbl_45975.p1, terminal, 88711, 88926
-recovered pasa_asmbl_45975.p1, internal, 86297, 86423
-recovered pasa_asmbl_45975.p1, internal, 86871, 86945
-recovered pasa_asmbl_45975.p1, internal, 87042, 87235
-recovered pasa_asmbl_45975.p1, internal, 87361, 87398
-recovered pasa_asmbl_45975.p1, internal, 87517, 87602
-recovered pasa_asmbl_45975.p1, internal, 87715, 87938
-recovered pasa_asmbl_45975.p1, internal, 88098, 88148
-recovered pasa_asmbl_45975.p1, internal, 88335, 88566
Valid prediction for Augustus_model.g8948.t1
Valid prediction for GlimmerHMM_glimmerT_13380-T1
Valid prediction for snap_scaffold_5-snap.2686-T1
Couldn't classify 48994, 49149
Sorry, prediction pasa_asmbl_45983.p1 fails validation.
(AGC)	 GC	48994-49149	GT	AGG
(GTG)	 AG	49872-50088	GT	CAG
(GTC)	 AG	50706-50954	GT	AGG
(CCT)	 AG	51913-52139	GT	TGG
(TGG)	 AG	52299-52595	AG	AGA
-recovered pasa_asmbl_45983.p1, terminal, 52299, 52595
-recovered pasa_asmbl_45983.p1, internal, 49872, 50088
-recovered pasa_asmbl_45983.p1, internal, 50706, 50954
-recovered pasa_asmbl_45983.p1, internal, 51913, 52139
Valid prediction for snap_scaffold_5-snap.2692-T1
Valid prediction for GeneMark_model.22485_t
Valid prediction for GlimmerHMM_glimmerT_13382-T1
Valid prediction for pasa_asmbl_45989.p1
Valid prediction for snap_scaffold_5-snap.2682-T1
Valid prediction for CodingQuarry_transcript_52222-T1
Valid prediction for GlimmerHMM_glimmerT_13392-T1
Valid prediction for CodingQuarry_transcript_52224-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10498, rend_intergenic: 8275  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45524, rend_intergenic: 39480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89008, rend_intergenic: 84457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96649, rend_intergenic: 92795  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113832, rend_intergenic: 103259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155815, rend_intergenic: 152465  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 225544
-exon list size: 568


building trellis

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41.2    
41.4    
41.6    
41.8    
41.9    
42.1    
42.3    
42.5    
42.6    
42.8    
43.0    
43.2    
43.3    
43.5    
43.7    
43.9    
44.0    
44.2    
44.4    
44.6    
44.7    
44.9    
45.1    
45.3    
45.4    
45.6    
45.8    
46.0    
46.1    
46.3    
46.5    
46.7    
46.8    
47.0    
47.2    
47.4    
47.5    
47.7    
47.9    
48.1    
48.2    
48.4    
48.6    
48.8    
48.9    
49.1    
49.3    
49.5    
49.6    
49.8    
50.0    
50.2    
50.4    
50.5    
50.7    
50.9    
51.1    
51.2    
51.4    
51.6    
51.8    
51.9    
52.1    
52.3    
52.5    
52.6    
52.8    
53.0    
53.2    
53.3    
53.5    
53.7    
53.9    
54.0    
54.2    
54.4    
54.6    
54.7    
54.9    
55.1    
55.3    
55.4    
55.6    
55.8    
56.0    
56.1    
56.3    
56.5    
56.7    
56.8    
57.0    
57.2    
57.4    
57.5    
57.7    
57.9    
58.1    
58.2    
58.4    
58.6    
58.8    
58.9    
59.1    
59.3    
59.5    
59.6    
59.8    
60.0    
60.2    
60.4    
60.5    
60.7    
60.9    
61.1    
61.2    
61.4    
61.6    
61.8    
61.9    
62.1    
62.3    
62.5    
62.6    
62.8    
63.0    
63.2    
63.3    
63.5    
63.7    
63.9    
64.0    
64.2    
64.4    
64.6    
64.7    
64.9    
65.1    
65.3    
65.4    
65.6    
65.8    
66.0    
66.1    
66.3    
66.5    
66.7    
66.8    
67.0    
67.2    
67.4    
67.5    
67.7    
67.9    
68.1    
68.2    
68.4    
68.6    
68.8    
68.9    
69.1    
69.3    
69.5    
69.6    
69.8    
70.0    
70.2    
70.4    
70.5    
70.7    
70.9    
71.1    
71.2    
71.4    
71.6    
71.8    
71.9    
72.1    
72.3    
72.5    
72.6    
72.8    
73.0    
73.2    
73.3    
73.5    
73.7    
73.9    
74.0    
74.2    
74.4    
74.6    
74.7    
74.9    
75.1    
75.3    
75.4    
75.6    
75.8    
76.0    
76.1    
76.3    
76.5    
76.7    
76.8    
77.0    
77.2    
77.4    
77.5    
77.7    
77.9    
78.1    
78.2    
78.4    
78.6    
78.8    
78.9    
79.1    
79.3    
79.5    
79.6    
79.8    
80.0    
80.2    
80.4    
80.5    
80.7    
80.9    
81.1    
81.2    
81.4    
81.6    
81.8    
81.9    
82.1    
82.3    
82.5    
82.6    
82.8    
83.0    
83.2    
83.3    
83.5    
83.7    
83.9    
84.0    
84.2    
84.4    
84.6    
84.7    
84.9    
85.1    
85.3    
85.4    
85.6    
85.8    
86.0    
86.1    
86.3    
86.5    
86.7    
86.8    
87.0    
87.2    
87.4    
87.5    
87.7    
87.9    
88.1    
88.2    
88.4    
88.6    
88.8    
88.9    
89.1    
89.3    
89.5    
89.6    
89.8    
90.0    
90.2    
90.4    
90.5    
90.7    
90.9    
91.1    
91.2    
91.4    
91.6    
91.8    
91.9    
92.1    
92.3    
92.5    
92.6    
92.8    
93.0    
93.2    
93.3    
93.5    
93.7    
93.9    
94.0    
94.2    
94.4    
94.6    
94.7    
94.9    
95.1    
95.3    
95.4    
95.6    
95.8    
96.0    
96.1    
96.3    
96.5    
96.7    
96.8    
97.0    
97.2    
97.4    
97.5    
97.7    
97.9    
98.1    
98.2    
98.4    
98.6    
98.8    
98.9    
99.1    
99.3    
99.5    
99.6    
99.8    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 10498, rend_intergenic: 8275  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45524, rend_intergenic: 39480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89008, rend_intergenic: 84457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96649, rend_intergenic: 92795  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113832, rend_intergenic: 103259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155815, rend_intergenic: 152465  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 24 predictions persist after filtering for low support