-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_5/scaffold_5_13370546-13581124

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.22278_t
Valid prediction for GlimmerHMM_glimmerT_13221-T1
Valid prediction for GeneMark_model.22240_t
Valid prediction for Augustus_model.g8839.t1
Valid prediction for GlimmerHMM_glimmerT_13225-T1
Valid prediction for Augustus_model.g8833.t1
Valid prediction for snap_scaffold_5-snap.2506-T1
Valid prediction for snap_scaffold_5-snap.2494-T1
Valid prediction for GeneMark_model.22258_t
Valid prediction for GeneMark_model.22285_t
Valid prediction for GeneMark_model.22289_t
Valid prediction for GeneMark_model.22287_t
Valid prediction for GeneMark_model.22297_t
Valid prediction for GeneMark_model.22267_t
Valid prediction for snap_scaffold_5-snap.2484-T1
Valid prediction for GeneMark_model.22294_t
Valid prediction for GeneMark_model.22268_t
Valid prediction for GlimmerHMM_glimmerT_13214-T1
Valid prediction for snap_scaffold_5-snap.2499-T1
Valid prediction for GeneMark_model.22291_t
Valid prediction for snap_scaffold_5-snap.2488-T1
Valid prediction for GeneMark_model.22281_t
Valid prediction for Augustus_model.g8829.t1
Valid prediction for GeneMark_model.22236_t
Valid prediction for GlimmerHMM_glimmerT_13223-T1
Valid prediction for Augustus_model.g8826.t1
Valid prediction for snap_scaffold_5-snap.2516-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for Augustus_model.g8830.t1
Valid prediction for snap_scaffold_5-snap.2496-T1
Valid prediction for Augustus_model.g8838.t1
Valid prediction for snap_scaffold_5-snap.2483-T1
Valid prediction for GlimmerHMM_glimmerT_13228-T1
Valid prediction for GeneMark_model.22271_t
Valid prediction for GlimmerHMM_glimmerT_13219-T1
Valid prediction for snap_scaffold_5-snap.2498-T1
Valid prediction for Augustus_model.g8835.t1
Valid prediction for GeneMark_model.22279_t
Valid prediction for GeneMark_model.22251_t
Valid prediction for GeneMark_model.22248_t
Valid prediction for Augustus_model.g8823.t1
Valid prediction for GlimmerHMM_glimmerT_13217-T1
Valid prediction for GlimmerHMM_glimmerT_13216-T1
Valid prediction for GeneMark_model.22237_t
Valid prediction for GeneMark_model.22256_t
Valid prediction for snap_scaffold_5-snap.2485-T1
Valid prediction for GeneMark_model.22254_t
Valid prediction for GlimmerHMM_glimmerT_13205-T1
Valid prediction for GeneMark_model.22263_t
Valid prediction for snap_scaffold_5-snap.2489-T1
Valid prediction for snap_scaffold_5-snap.2486-T1
Valid prediction for GeneMark_model.22276_t
Valid prediction for GlimmerHMM_glimmerT_13234-T1
Valid prediction for Augustus_model.g8836.t1
Valid prediction for GlimmerHMM_glimmerT_13210-T1
Valid prediction for snap_scaffold_5-snap.2511-T1
Valid prediction for GlimmerHMM_glimmerT_13226-T1
Valid prediction for snap_scaffold_5-snap.2501-T1
Valid prediction for snap_scaffold_5-snap.2492-T1
Valid prediction for GeneMark_model.22274_t
Valid prediction for GlimmerHMM_glimmerT_13220-T1
Valid prediction for snap_scaffold_5-snap.2475-T1
Valid prediction for GlimmerHMM_glimmerT_13233-T1
Valid prediction for GlimmerHMM_glimmerT_13208-T1
Valid prediction for snap_scaffold_5-snap.2514-T1
Valid prediction for GeneMark_model.22259_t
Valid prediction for GeneMark_model.22239_t
Valid prediction for GeneMark_model.22262_t
Valid prediction for GeneMark_model.22244_t
Valid prediction for Augustus_model.g8820.t1
Valid prediction for GlimmerHMM_glimmerT_13209-T1
Valid prediction for GeneMark_model.22241_t
Valid prediction for snap_scaffold_5-snap.2504-T1
Valid prediction for Augustus_model.g8840.t1
Valid prediction for snap_scaffold_5-snap.2481-T1
Valid prediction for snap_scaffold_5-snap.2479-T1
Valid prediction for GeneMark_model.22283_t
Valid prediction for snap_scaffold_5-snap.2502-T1
Valid prediction for snap_scaffold_5-snap.2512-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.22292_t
Valid prediction for GeneMark_model.22280_t
Valid prediction for snap_scaffold_5-snap.2480-T1
Valid prediction for GlimmerHMM_glimmerT_13218-T1
Valid prediction for snap_scaffold_5-snap.2505-T1
Valid prediction for GeneMark_model.22242_t
Valid prediction for GeneMark_model.22293_t
Valid prediction for GeneMark_model.22282_t
Valid prediction for GeneMark_model.22257_t
Valid prediction for Augustus_model.g8821.t1
Valid prediction for Augustus_model.g8832.t1
Valid prediction for GlimmerHMM_glimmerT_13224-T1
Valid prediction for snap_scaffold_5-snap.2495-T1
Valid prediction for GeneMark_model.22288_t
Valid prediction for GlimmerHMM_glimmerT_13215-T1
Valid prediction for Augustus_model.g8834.t1
Valid prediction for GeneMark_model.22286_t
Valid prediction for GlimmerHMM_glimmerT_13211-T1
Valid prediction for GlimmerHMM_glimmerT_13213-T1
Valid prediction for snap_scaffold_5-snap.2508-T1
Valid prediction for GeneMark_model.22245_t
Valid prediction for GlimmerHMM_glimmerT_13227-T1
Valid prediction for Augustus_model.g8837.t1
Valid prediction for snap_scaffold_5-snap.2491-T1
Valid prediction for snap_scaffold_5-snap.2476-T1
Valid prediction for GeneMark_model.22266_t
Valid prediction for GeneMark_model.22261_t
Valid prediction for snap_scaffold_5-snap.2500-T1
Valid prediction for snap_scaffold_5-snap.2493-T1
Valid prediction for snap_scaffold_5-snap.2510-T1
Valid prediction for snap_scaffold_5-snap.2478-T1
Valid prediction for GlimmerHMM_glimmerT_13229-T1
Valid prediction for GeneMark_model.22273_t
Valid prediction for GeneMark_model.22270_t
Valid prediction for snap_scaffold_5-snap.2477-T1
Valid prediction for GlimmerHMM_glimmerT_13231-T1
Valid prediction for snap_scaffold_5-snap.2482-T1
Valid prediction for Augustus_model.g8824.t1
Valid prediction for GeneMark_model.22264_t
Valid prediction for GeneMark_model.22243_t
Valid prediction for snap_scaffold_5-snap.2513-T1
Valid prediction for snap_scaffold_5-snap.2509-T1
Valid prediction for snap_scaffold_5-snap.2515-T1
Valid prediction for snap_scaffold_5-snap.2507-T1
Valid prediction for GlimmerHMM_glimmerT_13232-T1
Valid prediction for GeneMark_model.22247_t
Valid prediction for GlimmerHMM_glimmerT_13206-T1
Valid prediction for GeneMark_model.22269_t
Valid prediction for snap_scaffold_5-snap.2518-T1
Valid prediction for GeneMark_model.22272_t
Valid prediction for Augustus_model.g8841.t1
Valid prediction for GlimmerHMM_glimmerT_13207-T1
Valid prediction for snap_scaffold_5-snap.2517-T1
Valid prediction for GeneMark_model.22275_t
Valid prediction for GeneMark_model.22249_t
Valid prediction for GeneMark_model.22238_t
Valid prediction for GeneMark_model.22260_t
Valid prediction for Augustus_model.g8822.t1
Valid prediction for GlimmerHMM_glimmerT_13212-T1
Valid prediction for GeneMark_model.22290_t
Valid prediction for GeneMark_model.22246_t
Valid prediction for GeneMark_model.22296_t
Valid prediction for GlimmerHMM_glimmerT_13230-T1
Valid prediction for GeneMark_model.22250_t
Valid prediction for Augustus_model.g8828.t1
Valid prediction for snap_scaffold_5-snap.2487-T1
Valid prediction for Augustus_model.g8827.t1
Valid prediction for GeneMark_model.22252_t
Valid prediction for Augustus_model.g8831.t1
Valid prediction for GeneMark_model.22284_t
Valid prediction for GeneMark_model.22255_t
Valid prediction for GeneMark_model.22253_t
Valid prediction for snap_scaffold_5-snap.2490-T1
Valid prediction for GeneMark_model.22265_t
Valid prediction for snap_scaffold_5-snap.2503-T1
Valid prediction for GeneMark_model.22277_t
Valid prediction for GeneMark_model.22295_t
Valid prediction for snap_scaffold_5-snap.2497-T1
Valid prediction for GlimmerHMM_glimmerT_13222-T1
Valid prediction for Augustus_model.g8825.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 26319, rend_intergenic: 24328  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60914, rend_intergenic: 58951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71614, rend_intergenic: 66613  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81401, rend_intergenic: 76053  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91244, rend_intergenic: 88744  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97599, rend_intergenic: 96607  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101832, rend_intergenic: 98998  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108581, rend_intergenic: 108473  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114529, rend_intergenic: 108585  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116502, rend_intergenic: 114708  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122294, rend_intergenic: 122092  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127009, rend_intergenic: 123083  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173763, rend_intergenic: 127524  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177927, rend_intergenic: 173818  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183322, rend_intergenic: 178520  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187113, rend_intergenic: 183625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194259, rend_intergenic: 187570  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200302, rend_intergenic: 194668  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209056, rend_intergenic: 200312  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 210579
-exon list size: 752


building trellis

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93.0    
93.1    
93.2    
93.4    
93.5    
93.6    
93.8    
93.9    
94.0    
94.2    
94.3    
94.4    
94.6    
94.7    
94.8    
95.0    
95.1    
95.2    
95.4    
95.5    
95.6    
95.8    
95.9    
96.0    
96.2    
96.3    
96.4    
96.6    
96.7    
96.8    
96.9    
97.1    
97.2    
97.3    
97.5    
97.6    
97.7    
97.9    
98.0    
98.1    
98.3    
98.4    
98.5    
98.7    
98.8    
98.9    
99.1    
99.2    
99.3    
99.5    
99.6    
99.7    
99.9    
-found 47 predictions from path traversal
Error with prediction: snap lend_intergenic: 26319, rend_intergenic: 24328  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60914, rend_intergenic: 58951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71614, rend_intergenic: 66613  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81401, rend_intergenic: 76053  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91244, rend_intergenic: 88744  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97599, rend_intergenic: 96607  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101832, rend_intergenic: 98998  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108581, rend_intergenic: 108473  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114529, rend_intergenic: 108585  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116502, rend_intergenic: 114708  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122294, rend_intergenic: 122092  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127009, rend_intergenic: 123083  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173763, rend_intergenic: 127524  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177927, rend_intergenic: 173818  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183322, rend_intergenic: 178520  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187113, rend_intergenic: 183625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194259, rend_intergenic: 187570  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200302, rend_intergenic: 194668  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209056, rend_intergenic: 200312  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support