-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_5/scaffold_5_1323919-1625997

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.19612_t
Valid prediction for GlimmerHMM_glimmerT_11724-T1
Valid prediction for GeneMark_model.19543_t
Valid prediction for snap_scaffold_5-snap.299-T1
Valid prediction for GeneMark_model.19569_t
Valid prediction for GeneMark_model.19550_t
Valid prediction for snap_scaffold_5-snap.315-T1
Valid prediction for snap_scaffold_5-snap.313-T1
Valid prediction for GlimmerHMM_glimmerT_11741-T1
Couldn't classify 160076, 160349
Couldn't classify 160630, 160763
Sorry, prediction pasa_asmbl_44989.p1 fails validation.
(TCC)	 GA	160076-160349	GT	TGG
(ATG)	 AG	160630-160763	TG	ATT
Valid prediction for GeneMark_model.19579_t
Valid prediction for Augustus_model.g7714.t1
Valid prediction for GeneMark_model.19563_t
Valid prediction for GeneMark_model.19572_t
Valid prediction for snap_scaffold_5-snap.290-T1
Valid prediction for GlimmerHMM_glimmerT_11731-T1
Valid prediction for GeneMark_model.19561_t
Couldn't classify 24357, 24397
Couldn't classify 29937, 30025
Sorry, prediction pasa_asmbl_43784.p1 fails validation.
(CGT)	 GC	24357-24397	GT	CAG
(CTG)	 AG	24622-24757	GT	AGG
(GGC)	 AG	27171-27323	GT	AGG
(CTC)	 AG	27808-27935	GT	AGG
(GTT)	 AG	28054-28186	GT	CCG
(ATC)	 AG	28656-28848	GT	GCG
(CGT)	 AG	29325-29468	GT	AGG
(CTT)	 AG	29937-30025	GT	TGG
-recovered pasa_asmbl_43784.p1, internal, 24622, 24757
-recovered pasa_asmbl_43784.p1, internal, 27171, 27323
-recovered pasa_asmbl_43784.p1, internal, 27808, 27935
-recovered pasa_asmbl_43784.p1, internal, 28054, 28186
-recovered pasa_asmbl_43784.p1, internal, 28656, 28848
-recovered pasa_asmbl_43784.p1, internal, 29325, 29468
-recovered pasa_asmbl_43784.p1, internal, 29937, 30025
Valid prediction for GeneMark_model.19556_t
Valid prediction for snap_scaffold_5-snap.287-T1
Valid prediction for snap_scaffold_5-snap.279-T1
Valid prediction for Augustus_model.g7726.t1
Valid prediction for GlimmerHMM_glimmerT_11721-T1
Valid prediction for GeneMark_model.19565_t
Valid prediction for GeneMark_model.19574_t
Valid prediction for Augustus_model.g7727.t1
Valid prediction for Augustus_model.g7716.t1
Valid prediction for GlimmerHMM_glimmerT_11725-T1
Valid prediction for snap_scaffold_5-snap.274-T1
Valid prediction for GeneMark_model.19581_t
Valid prediction for Augustus_model.g7724.t1
Valid prediction for GlimmerHMM_glimmerT_11732-T1
Valid prediction for GeneMark_model.19559_t
Valid prediction for snap_scaffold_5-snap.285-T1
Valid prediction for GeneMark_model.19607_t
Valid prediction for CodingQuarry_transcript_51865-T1
Valid prediction for Augustus_model.g7725.t1
Valid prediction for GeneMark_model.19595_t
Valid prediction for snap_scaffold_5-snap.307-T1
Valid prediction for GeneMark_model.19604_t
Valid prediction for GlimmerHMM_glimmerT_11719-T1
Valid prediction for GeneMark_model.19544_t
Valid prediction for snap_scaffold_5-snap.305-T1
Couldn't classify 251028, 251094
Couldn't classify 251206, 251522
Sorry, prediction pasa_asmbl_43802.p1 fails validation.
(GGA)	 TA	251028-251094	GT	CGG
(GAA)	 AG	251206-251522	AA	AGA
Valid prediction for snap_scaffold_5-snap.325-T1
Valid prediction for GeneMark_model.19571_t
Valid prediction for snap_scaffold_5-snap.316-T1
Valid prediction for snap_scaffold_5-snap.306-T1
Couldn't classify 16307, 16507
Couldn't classify 17133, 17252
Sorry, prediction pasa_asmbl_45059.p2 fails validation.
(CAG)	 AC	16307-16507	GT	TGG
(GTC)	 AG	17133-17252	AG	AGA
Valid prediction for GeneMark_model.19546_t
Valid prediction for Augustus_model.g7709.t1
Valid prediction for GeneMark_model.19590_t
Valid prediction for GeneMark_model.19602_t
Valid prediction for GlimmerHMM_glimmerT_11714-T1
Valid prediction for snap_scaffold_5-snap.323-T1
Valid prediction for GeneMark_model.19577_t
Valid prediction for snap_scaffold_5-snap.318-T1
Valid prediction for GeneMark_model.19548_t
Valid prediction for GeneMark_model.19593_t
Couldn't classify 21728, 21858
Couldn't classify 23083, 23225
Sorry, prediction pasa_asmbl_45044.p1 fails validation.
(CAG)	 TG	21728-21858	GT	AGG
(GTT)	 AG	21977-22109	GT	CTG
(ATC)	 AG	22577-22769	GT	GCG
(CGT)	 AG	23083-23225	GG	AAG
-recovered pasa_asmbl_45044.p1, internal, 21977, 22109
-recovered pasa_asmbl_45044.p1, internal, 22577, 22769
Valid prediction for GlimmerHMM_glimmerT_11730-T1
Valid prediction for GeneMark_model.19555_t
Couldn't classify 18226, 18394
Couldn't classify 19638, 19718
Sorry, prediction pasa_asmbl_45032.p1 fails validation.
(GAC)	 GC	18226-18394	GT	ACG
(CGT)	 AG	18706-18818	GT	TGG
(CCT)	 AG	19638-19718	TG	AGT
-recovered pasa_asmbl_45032.p1, internal, 18706, 18818
Valid prediction for GlimmerHMM_glimmerT_11736-T1
Valid prediction for GeneMark_model.19567_t
Valid prediction for snap_scaffold_5-snap.295-T1
Valid prediction for GeneMark_model.19583_t
Valid prediction for Augustus_model.g7713.t1
Valid prediction for GeneMark_model.19558_t
Valid prediction for snap_scaffold_5-snap.320-T1
Valid prediction for GeneMark_model.19552_t
Valid prediction for Augustus_model.g7711.t1
Valid prediction for GeneMark_model.19587_t
Valid prediction for GeneMark_model.19603_t
Valid prediction for GeneMark_model.19575_t
Valid prediction for snap_scaffold_5-snap.317-T1
Valid prediction for snap_scaffold_5-snap.296-T1
Valid prediction for snap_scaffold_5-snap.281-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for snap_scaffold_5-snap.319-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for Augustus_model.g7712.t1
Valid prediction for GeneMark_model.19605_t
Valid prediction for GeneMark_model.19589_t
Valid prediction for GlimmerHMM_glimmerT_11728-T1
Valid prediction for GlimmerHMM_glimmerT_11716-T1
Valid prediction for snap_scaffold_5-snap.303-T1
Valid prediction for snap_scaffold_5-snap.284-T1
Couldn't classify 246791, 247342
Sorry, prediction pasa_asmbl_43800.p1 fails validation.
(CAG)	 GA	246791-247342	TG	GAT
Valid prediction for GlimmerHMM_glimmerT_11717-T1
Couldn't classify 51402, 51516
Sorry, prediction pasa_asmbl_43788.p1 fails validation.
(AAC)	 GG	51402-51516	GT	AGG
(GTG)	 AG	52240-52469	GT	TGG
(CCC)	 AG	52570-52762	GT	CGG
(ACC)	 AG	53046-53179	GT	AGG
(GCC)	 AG	54394-54552	GT	AGG
(GTG)	 AG	54791-54901	GT	AGG
(GTG)	 AG	55283-55393	GT	AGG
(TTC)	 AG	55553-55654	GT	AGG
(GTG)	 AG	55849-55989	GT	AGG
(AGG)	 AG	56374-56492	GT	CAG
(GGT)	 AG	56724-56867	GT	AGG
(GTT)	 AG	57257-57549	GT	AGG
(CTG)	 AG	57683-57793	GT	AGG
(GCG)	 AG	58032-58248	GT	TGG
(GTA)	 AG	58385-58537	GT	AGG
(GAA)	 AG	58812-58978	GT	GGG
(GGT)	 AG	59419-59579	GT	AGG
(GCC)	 AG	61128-61403	AG	GAA
-recovered pasa_asmbl_43788.p1, terminal, 61128, 61403
-recovered pasa_asmbl_43788.p1, internal, 52240, 52469
-recovered pasa_asmbl_43788.p1, internal, 52570, 52762
-recovered pasa_asmbl_43788.p1, internal, 53046, 53179
-recovered pasa_asmbl_43788.p1, internal, 54394, 54552
-recovered pasa_asmbl_43788.p1, internal, 54791, 54901
-recovered pasa_asmbl_43788.p1, internal, 55283, 55393
-recovered pasa_asmbl_43788.p1, internal, 55553, 55654
-recovered pasa_asmbl_43788.p1, internal, 55849, 55989
-recovered pasa_asmbl_43788.p1, internal, 56374, 56492
-recovered pasa_asmbl_43788.p1, internal, 56724, 56867
-recovered pasa_asmbl_43788.p1, internal, 57257, 57549
-recovered pasa_asmbl_43788.p1, internal, 57683, 57793
-recovered pasa_asmbl_43788.p1, internal, 58032, 58248
-recovered pasa_asmbl_43788.p1, internal, 58385, 58537
-recovered pasa_asmbl_43788.p1, internal, 58812, 58978
-recovered pasa_asmbl_43788.p1, internal, 59419, 59579
Valid prediction for Augustus_model.g7710.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g7723.t1
Valid prediction for snap_scaffold_5-snap.310-T1
Valid prediction for Augustus_model.g7721.t1
Valid prediction for GeneMark_model.19566_t
Valid prediction for Augustus_model.g7728.t1
Valid prediction for GeneMark_model.19592_t
Valid prediction for GeneMark_model.19597_t
Valid prediction for snap_scaffold_5-snap.302-T1
Valid prediction for GlimmerHMM_glimmerT_11723-T1
Valid prediction for GeneMark_model.19545_t
Valid prediction for GeneMark_model.19591_t
Valid prediction for GlimmerHMM_glimmerT_11734-T1
Valid prediction for GeneMark_model.19557_t
Valid prediction for GeneMark_model.19609_t
Valid prediction for snap_scaffold_5-snap.308-T1
Valid prediction for GlimmerHMM_glimmerT_11715-T1
Valid prediction for snap_scaffold_5-snap.298-T1
Valid prediction for GeneMark_model.19573_t
Valid prediction for GeneMark_model.19576_t
Valid prediction for snap_scaffold_5-snap.324-T1
Valid prediction for snap_scaffold_5-snap.300-T1
Valid prediction for GlimmerHMM_glimmerT_11726-T1
Valid prediction for snap_scaffold_5-snap.277-T1
Valid prediction for GeneMark_model.19584_t
Valid prediction for snap_scaffold_5-snap.309-T1
Valid prediction for GlimmerHMM_glimmerT_11742-T1
Valid prediction for snap_scaffold_5-snap.276-T1
Valid prediction for GlimmerHMM_glimmerT_11735-T1
Valid prediction for GeneMark_model.19598_t
Valid prediction for GlimmerHMM_glimmerT_11729-T1
Valid prediction for GeneMark_model.19564_t
Valid prediction for GeneMark_model.19600_t
Valid prediction for GeneMark_model.19568_t
Valid prediction for GeneMark_model.19551_t
Valid prediction for GlimmerHMM_glimmerT_11739-T1
Valid prediction for snap_scaffold_5-snap.291-T1
Valid prediction for GeneMark_model.19553_t
Valid prediction for GeneMark_model.19578_t
Valid prediction for Augustus_model.g7717.t1
Valid prediction for GlimmerHMM_glimmerT_11733-T1
Valid prediction for snap_scaffold_5-snap.301-T1
Valid prediction for GeneMark_model.19599_t
Valid prediction for GeneMark_model.19554_t
Valid prediction for GeneMark_model.19601_t
Valid prediction for Augustus_model.g7718.t1
Valid prediction for snap_scaffold_5-snap.288-T1
Couldn't classify 77084, 77635
Sorry, prediction pasa_asmbl_45249.p1 fails validation.
(GAT)	 AA	77084-77635	TG	GAT
Valid prediction for snap_scaffold_5-snap.312-T1
Valid prediction for snap_scaffold_5-snap.321-T1
Valid prediction for snap_scaffold_5-snap.275-T1
Valid prediction for GeneMark_model.19585_t
Valid prediction for GlimmerHMM_glimmerT_11738-T1
Valid prediction for GeneMark_model.19580_t
Valid prediction for GeneMark_model.19582_t
Valid prediction for snap_scaffold_5-snap.326-T1
Valid prediction for GeneMark_model.19547_t
Valid prediction for snap_scaffold_5-snap.297-T1
Valid prediction for snap_scaffold_5-snap.278-T1
Valid prediction for snap_scaffold_5-snap.289-T1
Valid prediction for snap_scaffold_5-snap.304-T1
Valid prediction for GlimmerHMM_glimmerT_11718-T1
Valid prediction for GlimmerHMM_glimmerT_11740-T1
Valid prediction for snap_scaffold_5-snap.286-T1
Valid prediction for GlimmerHMM_glimmerT_11737-T1
Valid prediction for snap_scaffold_5-snap.283-T1
Valid prediction for GeneMark_model.19586_t
Valid prediction for snap_scaffold_5-snap.280-T1
Valid prediction for GeneMark_model.19549_t
Valid prediction for Augustus_model.g7720.t1
Valid prediction for snap_scaffold_5-snap.292-T1
Valid prediction for Augustus_model.g7722.t1
Valid prediction for GeneMark_model.19608_t
Valid prediction for snap_scaffold_5-snap.294-T1
Valid prediction for Augustus_model.g7715.t1
Couldn't classify 259030, 259425
Sorry, prediction pasa_asmbl_43785.p1 fails validation.
(CTG)	 TT	259030-259425	AC	AGA
Valid prediction for GeneMark_model.19613_t
Valid prediction for GlimmerHMM_glimmerT_11720-T1
Valid prediction for GeneMark_model.19560_t
Valid prediction for Augustus_model.g7729.t1
Valid prediction for GeneMark_model.19614_t
Valid prediction for GlimmerHMM_glimmerT_11727-T1
Valid prediction for snap_scaffold_5-snap.311-T1
Valid prediction for snap_scaffold_5-snap.322-T1
Valid prediction for GeneMark_model.19594_t
Valid prediction for pasa_asmbl_45244.p1
Valid prediction for snap_scaffold_5-snap.314-T1
Valid prediction for Augustus_model.g7719.t1
Valid prediction for GeneMark_model.19570_t
Valid prediction for GeneMark_model.19596_t
Valid prediction for snap_scaffold_5-snap.293-T1
Valid prediction for GeneMark_model.19562_t
Valid prediction for GeneMark_model.19610_t
Valid prediction for GeneMark_model.19588_t
Couldn't classify 156477, 156750
Sorry, prediction pasa_asmbl_45243.p2 fails validation.
(AGA)	 CC	156477-156750	GT	AGG
(GGA)	 AG	157885-158087	GT	AAG
(GTG)	 AG	158384-159082	GA	AAG
-recovered pasa_asmbl_45243.p2, terminal, 158384, 159082
-recovered pasa_asmbl_45243.p2, internal, 157885, 158087
Valid prediction for snap_scaffold_5-snap.282-T1
Valid prediction for GlimmerHMM_glimmerT_11722-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 41209, rend_intergenic: 12721  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49724, rend_intergenic: 46038  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61403, rend_intergenic: 50904  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72946, rend_intergenic: 67174  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81911, rend_intergenic: 76015  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108539, rend_intergenic: 82779  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136204, rend_intergenic: 125576  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143777, rend_intergenic: 141787  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153286, rend_intergenic: 152121  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153438, rend_intergenic: 153288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158296, rend_intergenic: 153537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 281443, rend_intergenic: 279203  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 281735, rend_intergenic: 281636  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 286249, rend_intergenic: 281829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 302079
-exon list size: 949


building trellis

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39.7    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.7    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.8    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 38 predictions from path traversal
Error with prediction: snap lend_intergenic: 41209, rend_intergenic: 12721  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49724, rend_intergenic: 46038  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61403, rend_intergenic: 50904  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72946, rend_intergenic: 67174  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81911, rend_intergenic: 76015  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108539, rend_intergenic: 82779  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136204, rend_intergenic: 125576  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143777, rend_intergenic: 141787  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153286, rend_intergenic: 152121  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153438, rend_intergenic: 153288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158296, rend_intergenic: 153537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 281443, rend_intergenic: 279203  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 281735, rend_intergenic: 281636  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 286249, rend_intergenic: 281829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 29 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11355
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 2 predictions from path traversal
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10298
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10233
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support