-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_5/scaffold_5_1115316-1334947

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.19529_t
Valid prediction for GeneMark_model.19530_t
Valid prediction for snap_scaffold_5-snap.264-T1
Valid prediction for GeneMark_model.19510_t
Valid prediction for GlimmerHMM_glimmerT_11708-T1
Valid prediction for GeneMark_model.19493_t
Valid prediction for GeneMark_model.19539_t
Valid prediction for snap_scaffold_5-snap.247-T1
Valid prediction for GlimmerHMM_glimmerT_11709-T1
Valid prediction for GeneMark_model.19484_t
Valid prediction for GlimmerHMM_glimmerT_11691-T1
Valid prediction for snap_scaffold_5-snap.229-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GeneMark_model.19495_t
Valid prediction for GeneMark_model.19534_t
Valid prediction for GlimmerHMM_glimmerT_11687-T1
Valid prediction for Augustus_model.g7693.t1
Valid prediction for GlimmerHMM_glimmerT_11703-T1
Valid prediction for GeneMark_model.19496_t
Valid prediction for GeneMark_model.19515_t
Valid prediction for GeneMark_model.19494_t
Valid prediction for GeneMark_model.19499_t
Valid prediction for Augustus_model.g7708.t1
Valid prediction for GeneMark_model.19528_t
Valid prediction for GeneMark_model.19518_t
Valid prediction for snap_scaffold_5-snap.249-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_5-snap.235-T1
Valid prediction for GeneMark_model.19520_t
Valid prediction for Augustus_model.g7702.t1
Valid prediction for GeneMark_model.19522_t
Valid prediction for GlimmerHMM_glimmerT_11698-T1
Valid prediction for snap_scaffold_5-snap.244-T1
Valid prediction for snap_scaffold_5-snap.273-T1
Valid prediction for GeneMark_model.19479_t
Valid prediction for snap_scaffold_5-snap.243-T1
Valid prediction for snap_scaffold_5-snap.232-T1
Valid prediction for Augustus_model.g7706.t1
Valid prediction for GeneMark_model.19513_t
Valid prediction for snap_scaffold_5-snap.256-T1
Valid prediction for GeneMark_model.19512_t
Valid prediction for GeneMark_model.19537_t
Valid prediction for GeneMark_model.19544_t
Valid prediction for snap_scaffold_5-snap.262-T1
Valid prediction for GeneMark_model.19526_t
Valid prediction for snap_scaffold_5-snap.263-T1
Valid prediction for GlimmerHMM_glimmerT_11694-T1
Valid prediction for snap_scaffold_5-snap.236-T1
Valid prediction for snap_scaffold_5-snap.239-T1
Valid prediction for GeneMark_model.19476_t
Valid prediction for snap_scaffold_5-snap.253-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for GeneMark_model.19527_t
Valid prediction for snap_scaffold_5-snap.234-T1
Valid prediction for GeneMark_model.19543_t
Valid prediction for Augustus_model.g7705.t1
Valid prediction for GeneMark_model.19486_t
Valid prediction for GeneMark_model.19509_t
Valid prediction for GlimmerHMM_glimmerT_11706-T1
Valid prediction for GeneMark_model.19503_t
Valid prediction for GeneMark_model.19524_t
Valid prediction for snap_scaffold_5-snap.257-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for GeneMark_model.19501_t
Valid prediction for GeneMark_model.19507_t
Valid prediction for snap_scaffold_5-snap.272-T1
Valid prediction for snap_scaffold_5-snap.251-T1
Valid prediction for snap_scaffold_5-snap.241-T1
Valid prediction for GeneMark_model.19481_t
Valid prediction for snap_scaffold_5-snap.260-T1
Valid prediction for GlimmerHMM_glimmerT_11713-T1
Valid prediction for GlimmerHMM_glimmerT_11707-T1
Valid prediction for GeneMark_model.19488_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.19541_t
Valid prediction for GeneMark_model.19504_t
Valid prediction for HiQ_model.g7700.t1
Valid prediction for Augustus_model.g7692.t1
Valid prediction for snap_scaffold_5-snap.240-T1
Valid prediction for GeneMark_model.19525_t
Valid prediction for GlimmerHMM_glimmerT_11692-T1
Valid prediction for GlimmerHMM_glimmerT_11705-T1
Valid prediction for HiQ_model.g7703.t1
Valid prediction for Augustus_model.g7699.t1
Valid prediction for pasa_asmbl_45227.p1
Valid prediction for GeneMark_model.19477_t
Valid prediction for GeneMark_model.19521_t
Valid prediction for pasa_asmbl_45235.p1
Valid prediction for Augustus_model.g7697.t1
Valid prediction for GeneMark_model.19483_t
Valid prediction for Augustus_model.g7696.t1
Valid prediction for GeneMark_model.19523_t
Valid prediction for GeneMark_model.19478_t
Valid prediction for GlimmerHMM_glimmerT_11710-T1
Valid prediction for snap_scaffold_5-snap.242-T1
Couldn't classify 198303, 198650
Sorry, prediction pasa_asmbl_45219.p1 fails validation.
(GAG)	 GA	198303-198650	GA	AAG
Valid prediction for GlimmerHMM_glimmerT_11696-T1
Valid prediction for snap_scaffold_5-snap.259-T1
Valid prediction for GlimmerHMM_glimmerT_11697-T1
Valid prediction for snap_scaffold_5-snap.265-T1
Valid prediction for snap_scaffold_5-snap.261-T1
Valid prediction for Augustus_model.g7701.t1
Valid prediction for snap_scaffold_5-snap.267-T1
Valid prediction for GeneMark_model.19511_t
Valid prediction for GeneMark_model.19540_t
Valid prediction for CodingQuarry_transcript_51861-T1
Valid prediction for snap_scaffold_5-snap.269-T1
Valid prediction for snap_scaffold_5-snap.250-T1
Valid prediction for snap_scaffold_5-snap.255-T1
Valid prediction for GeneMark_model.19506_t
Valid prediction for GeneMark_model.19487_t
Valid prediction for GeneMark_model.19514_t
Valid prediction for snap_scaffold_5-snap.271-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for snap_scaffold_5-snap.268-T1
Valid prediction for GlimmerHMM_glimmerT_11689-T1
Valid prediction for GlimmerHMM_glimmerT_11700-T1
Valid prediction for snap_scaffold_5-snap.230-T1
Valid prediction for snap_scaffold_5-snap.227-T1
Valid prediction for GeneMark_model.19497_t
Valid prediction for HiQ_model.g7704.t1
Valid prediction for snap_scaffold_5-snap.233-T1
Valid prediction for CodingQuarry_transcript_51863-T1
Valid prediction for snap_scaffold_5-snap.231-T1
Valid prediction for GlimmerHMM_glimmerT_11702-T1
Valid prediction for Augustus_model.g7695.t1
Valid prediction for Augustus_model.g7694.t1
Valid prediction for GeneMark_model.19519_t
Valid prediction for GeneMark_model.19502_t
Valid prediction for GeneMark_model.19508_t
Valid prediction for GlimmerHMM_glimmerT_11704-T1
Valid prediction for GeneMark_model.19536_t
Valid prediction for GeneMark_model.19542_t
Valid prediction for GeneMark_model.19492_t
Valid prediction for GeneMark_model.19480_t
Valid prediction for GlimmerHMM_glimmerT_11712-T1
Valid prediction for GeneMark_model.19498_t
Valid prediction for snap_scaffold_5-snap.248-T1
Valid prediction for GeneMark_model.19490_t
Valid prediction for GlimmerHMM_glimmerT_11690-T1
Valid prediction for GeneMark_model.19531_t
Valid prediction for GeneMark_model.19482_t
Valid prediction for GeneMark_model.19500_t
Valid prediction for snap_scaffold_5-snap.254-T1
Valid prediction for snap_scaffold_5-snap.258-T1
Valid prediction for Augustus_model.g7691.t1
Valid prediction for GeneMark_model.19489_t
Valid prediction for GeneMark_model.19485_t
Valid prediction for GlimmerHMM_glimmerT_11693-T1
Couldn't classify 120027, 120083
Couldn't classify 122154, 122987
Sorry, prediction pasa_asmbl_45228.p1 fails validation.
(AAG)	 TC	120027-120083	GT	AGG
(GAC)	 AG	122154-122987	GT	AGG
-recovered pasa_asmbl_45228.p1, internal, 122154, 122987
Couldn't classify 144416, 144473
Couldn't classify 148326, 148474
Sorry, prediction pasa_asmbl_45226.p1 fails validation.
(TCA)	 CA	144416-144473	GT	CTG
(TGA)	 AG	144689-144849	GT	AGG
(GCC)	 AG	145391-145521	GT	CGG
(GGG)	 AG	145990-146119	GT	AGG
(AAG)	 AG	146289-146424	GT	AGG
(ACA)	 AG	147267-147405	GT	GCG
(CTT)	 AG	147884-147941	GT	CGG
(GAC)	 AG	148025-148142	GT	TAG
(GGC)	 AG	148326-148474	GA	GGG
-recovered pasa_asmbl_45226.p1, internal, 144689, 144849
-recovered pasa_asmbl_45226.p1, internal, 145391, 145521
-recovered pasa_asmbl_45226.p1, internal, 145990, 146119
-recovered pasa_asmbl_45226.p1, internal, 146289, 146424
-recovered pasa_asmbl_45226.p1, internal, 147267, 147405
-recovered pasa_asmbl_45226.p1, internal, 147884, 147941
-recovered pasa_asmbl_45226.p1, internal, 148025, 148142
Valid prediction for GeneMark_model.19505_t
Valid prediction for GlimmerHMM_glimmerT_11701-T1
Valid prediction for GlimmerHMM_glimmerT_11699-T1
Valid prediction for snap_scaffold_5-snap.252-T1
Valid prediction for snap_scaffold_5-snap.237-T1
Valid prediction for snap_scaffold_5-snap.238-T1
Valid prediction for snap_scaffold_5-snap.246-T1
Valid prediction for snap_scaffold_5-snap.270-T1
Valid prediction for Augustus_model.g7698.t1
Valid prediction for snap_scaffold_5-snap.245-T1
Valid prediction for GlimmerHMM_glimmerT_11688-T1
Couldn't classify 200888, 201424
Sorry, prediction pasa_asmbl_45217.p1 fails validation.
(CCA)	 CC	200888-201424	CA	AGC
Valid prediction for GeneMark_model.19535_t
Valid prediction for GlimmerHMM_glimmerT_11711-T1
Valid prediction for GeneMark_model.19532_t
Valid prediction for GeneMark_model.19533_t
Valid prediction for GeneMark_model.19517_t
Valid prediction for GlimmerHMM_glimmerT_11695-T1
Valid prediction for GeneMark_model.19491_t
Valid prediction for Augustus_model.g7707.t1
Valid prediction for snap_scaffold_5-snap.266-T1
Couldn't classify 105585, 105651
Sorry, prediction pasa_asmbl_45231.p1 fails validation.
(GGG)	 AG	105585-105651	GT	CAG
(ACC)	 AG	106193-106381	GT	GGG
(GTC)	 AG	106800-106877	GT	AGG
(GTC)	 AG	106974-107135	GT	AGG
(AAG)	 AG	107403-107431	GC	GAG
-recovered pasa_asmbl_45231.p1, terminal, 107403, 107431
-recovered pasa_asmbl_45231.p1, internal, 105585, 105651
-recovered pasa_asmbl_45231.p1, internal, 106193, 106381
-recovered pasa_asmbl_45231.p1, internal, 106800, 106877
-recovered pasa_asmbl_45231.p1, internal, 106974, 107135
-recovered pasa_asmbl_45231.p1, internal, 107403, 107431
Valid prediction for pasa_asmbl_45221.p1
Valid prediction for snap_scaffold_5-snap.228-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16377, rend_intergenic: 14555  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26867, rend_intergenic: 16562  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30454, rend_intergenic: 27171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38943, rend_intergenic: 34364  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51703, rend_intergenic: 43248  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63066, rend_intergenic: 52089  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70259, rend_intergenic: 67070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75217, rend_intergenic: 71016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81772, rend_intergenic: 75470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84868, rend_intergenic: 82049  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104418, rend_intergenic: 95261  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121793, rend_intergenic: 107325  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126666, rend_intergenic: 125781  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140205, rend_intergenic: 136608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155195, rend_intergenic: 153909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157078, rend_intergenic: 155445  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159168, rend_intergenic: 158068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166259, rend_intergenic: 160062  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198699, rend_intergenic: 171438  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 219632
-exon list size: 924


building trellis

0.1    
0.2    
0.3    
0.4    
0.5    
0.6    
0.8    
0.9    
1.0    
1.1    
1.2    
1.3    
1.4    
1.5    
1.6    
1.7    
1.8    
1.9    
2.1    
2.2    
2.3    
2.4    
2.5    
2.6    
2.7    
2.8    
2.9    
3.0    
3.1    
3.2    
3.3    
3.5    
3.6    
3.7    
3.8    
3.9    
4.0    
4.1    
4.2    
4.3    
4.4    
4.5    
4.6    
4.8    
4.9    
5.0    
5.1    
5.2    
5.3    
5.4    
5.5    
5.6    
5.7    
5.8    
5.9    
6.0    
6.2    
6.3    
6.4    
6.5    
6.6    
6.7    
6.8    
6.9    
7.0    
7.1    
7.2    
7.3    
7.5    
7.6    
7.7    
7.8    
7.9    
8.0    
8.1    
8.2    
8.3    
8.4    
8.5    
8.6    
8.7    
8.9    
9.0    
9.1    
9.2    
9.3    
9.4    
9.5    
9.6    
9.7    
9.8    
9.9    
10.0    
10.2    
10.3    
10.4    
10.5    
10.6    
10.7    
10.8    
10.9    
11.0    
11.1    
11.2    
11.3    
11.4    
11.6    
11.7    
11.8    
11.9    
12.0    
12.1    
12.2    
12.3    
12.4    
12.5    
12.6    
12.7    
12.9    
13.0    
13.1    
13.2    
13.3    
13.4    
13.5    
13.6    
13.7    
13.8    
13.9    
14.0    
14.1    
14.3    
14.4    
14.5    
14.6    
14.7    
14.8    
14.9    
15.0    
15.1    
15.2    
15.3    
15.4    
15.6    
15.7    
15.8    
15.9    
16.0    
16.1    
16.2    
16.3    
16.4    
16.5    
16.6    
16.7    
16.8    
17.0    
17.1    
17.2    
17.3    
17.4    
17.5    
17.6    
17.7    
17.8    
17.9    
18.0    
18.1    
18.3    
18.4    
18.5    
18.6    
18.7    
18.8    
18.9    
19.0    
19.1    
19.2    
19.3    
19.4    
19.5    
19.7    
19.8    
19.9    
20.0    
20.1    
20.2    
20.3    
20.4    
20.5    
20.6    
20.7    
20.8    
21.0    
21.1    
21.2    
21.3    
21.4    
21.5    
21.6    
21.7    
21.8    
21.9    
22.0    
22.1    
22.2    
22.4    
22.5    
22.6    
22.7    
22.8    
22.9    
23.0    
23.1    
23.2    
23.3    
23.4    
23.5    
23.7    
23.8    
23.9    
24.0    
24.1    
24.2    
24.3    
24.4    
24.5    
24.6    
24.7    
24.8    
24.9    
25.1    
25.2    
25.3    
25.4    
25.5    
25.6    
25.7    
25.8    
25.9    
26.0    
26.1    
26.2    
26.3    
26.5    
26.6    
26.7    
26.8    
26.9    
27.0    
27.1    
27.2    
27.3    
27.4    
27.5    
27.6    
27.8    
27.9    
28.0    
28.1    
28.2    
28.3    
28.4    
28.5    
28.6    
28.7    
28.8    
28.9    
29.0    
29.2    
29.3    
29.4    
29.5    
29.6    
29.7    
29.8    
29.9    
30.0    
30.1    
30.2    
30.3    
30.5    
30.6    
30.7    
30.8    
30.9    
31.0    
31.1    
31.2    
31.3    
31.4    
31.5    
31.6    
31.7    
31.9    
32.0    
32.1    
32.2    
32.3    
32.4    
32.5    
32.6    
32.7    
32.8    
32.9    
33.0    
33.2    
33.3    
33.4    
33.5    
33.6    
33.7    
33.8    
33.9    
34.0    
34.1    
34.2    
34.3    
34.4    
34.6    
34.7    
34.8    
34.9    
35.0    
35.1    
35.2    
35.3    
35.4    
35.5    
35.6    
35.7    
35.9    
36.0    
36.1    
36.2    
36.3    
36.4    
36.5    
36.6    
36.7    
36.8    
36.9    
37.0    
37.1    
37.3    
37.4    
37.5    
37.6    
37.7    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.4    
38.6    
38.7    
38.8    
38.9    
39.0    
39.1    
39.2    
39.3    
39.4    
39.5    
39.6    
39.7    
39.8    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.8    
40.9    
41.0    
41.1    
41.3    
41.4    
41.5    
41.6    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.7    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.2    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.0    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.8    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 42 predictions from path traversal
Error with prediction: snap lend_intergenic: 16377, rend_intergenic: 14555  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26867, rend_intergenic: 16562  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30454, rend_intergenic: 27171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38943, rend_intergenic: 34364  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51703, rend_intergenic: 43248  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63066, rend_intergenic: 52089  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70259, rend_intergenic: 67070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75217, rend_intergenic: 71016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81772, rend_intergenic: 75470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84868, rend_intergenic: 82049  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104418, rend_intergenic: 95261  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121793, rend_intergenic: 107325  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126666, rend_intergenic: 125781  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140205, rend_intergenic: 136608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155195, rend_intergenic: 153909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157078, rend_intergenic: 155445  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159168, rend_intergenic: 158068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166259, rend_intergenic: 160062  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198699, rend_intergenic: 171438  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 23 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 204544 - 219632
-exon list size: 50


building trellis

1.9    
3.8    
5.8    
7.7    
9.6    
11.5    
13.5    
15.4    
17.3    
19.2    
21.2    
23.1    
25.0    
26.9    
28.8    
30.8    
32.7    
34.6    
36.5    
38.5    
40.4    
42.3    
44.2    
46.2    
48.1    
50.0    
51.9    
53.8    
55.8    
57.7    
59.6    
61.5    
63.5    
65.4    
67.3    
69.2    
71.2    
73.1    
75.0    
76.9    
78.8    
80.8    
82.7    
84.6    
86.5    
88.5    
90.4    
92.3    
94.2    
96.2    
98.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support