-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_498

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41161.t1
add_exon() Sorry, Augustus_model.g41161.t1 139-274-terminal-1 is invalid.
Valid prediction for snap_scaffold_498-snap.1-T1
Valid prediction for GeneMark_model.107801_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61923-T1
Couldn't classify 1576, 1678
Couldn't classify 1731, 2343
Sorry, prediction snap_scaffold_498-snap.2-T1 fails validation.
(AGA)	 AG	1576-1678	GT	CTG
(GAA)	 AG	1731-2343	GT	GGG
-recovered snap_scaffold_498-snap.2-T1, internal, 1576, 1678
-recovered snap_scaffold_498-snap.2-T1, internal, 1731, 2343
Valid prediction for GeneMark_model.107802_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6246, rend_intergenic: 4124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6466
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 6246, rend_intergenic: 4124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support