-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_496

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61920-T1
Valid prediction for GeneMark_model.107798_t
Couldn't classify 5554, 6455
Sorry, prediction snap_scaffold_496-snap.2-T1 fails validation.
(ATG)	 GG	595-829	GT	GGG
(ACA)	 AG	4132-4426	GT	GGG
(TCG)	 AG	4781-4793	GT	AGG
(GGC)	 AG	5554-6455	GT	CTG
-recovered snap_scaffold_496-snap.2-T1, initial, 595, 829
-recovered snap_scaffold_496-snap.2-T1, internal, 4132, 4426
-recovered snap_scaffold_496-snap.2-T1, internal, 4781, 4793
-recovered snap_scaffold_496-snap.2-T1, internal, 5554, 6455

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_496-snap.1-T1
Valid prediction for Augustus_model.g41159.t1
add_exon() Sorry, Augustus_model.g41159.t1 36-556-terminal-1 is invalid.
Valid prediction for GeneMark_model.107797_t
Couldn't classify 15, 552
Sorry, prediction GeneMark_model.107799_t fails validation.
(GCC)	 AG	15-552	GT	CAG
(CAG)	 AG	572-587	GT	AGG
(ACC)	 AG	605-850	TA	GAT
-recovered GeneMark_model.107799_t, terminal, 605, 850
-recovered GeneMark_model.107799_t, internal, 15, 552
-recovered GeneMark_model.107799_t, internal, 572, 587
Couldn't classify 6365, 6447
Sorry, prediction GeneMark_model.107796_t fails validation.
(ATG)	 CC	5329-5408	GT	CAG
(ATG)	 AG	6261-6333	GT	TTG
(ATG)	 AG	6365-6447	GT	AGG
-recovered GeneMark_model.107796_t, initial, 5329, 5408
-recovered GeneMark_model.107796_t, initial, 6261, 6333
-recovered GeneMark_model.107796_t, initial, 6365, 6447
-recovered GeneMark_model.107796_t, internal, 6261, 6333
-recovered GeneMark_model.107796_t, internal, 6365, 6447
Valid prediction for GlimmerHMM_glimmerT_61921-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4446, rend_intergenic: 595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6467
-exon list size: 38


building trellis

2.5    
5.0    
7.5    
10.0    
12.5    
15.0    
17.5    
20.0    
22.5    
25.0    
27.5    
30.0    
32.5    
35.0    
37.5    
40.0    
42.5    
45.0    
47.5    
50.0    
52.5    
55.0    
57.5    
60.0    
62.5    
65.0    
67.5    
70.0    
72.5    
75.0    
77.5    
80.0    
82.5    
85.0    
87.5    
90.0    
92.5    
95.0    
97.5    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 4446, rend_intergenic: 595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support