-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_495

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5666, 5679
Sorry, prediction GeneMark_model.107795_t fails validation.
(ATG)	 GA	5350-5369	GT	GGG
(GGT)	 AG	5391-5414	GT	GAG
(GAG)	 AG	5583-5645	GT	AGG
(AGG)	 AG	5666-5679	GT	AGG
-recovered GeneMark_model.107795_t, initial, 5350, 5369
add_exon() Sorry, GeneMark_model.107795_t 5391-5414-terminal-1 is invalid.
-recovered GeneMark_model.107795_t, terminal, 5391, 5414
-recovered GeneMark_model.107795_t, internal, 5391, 5414
-recovered GeneMark_model.107795_t, internal, 5583, 5645
-recovered GeneMark_model.107795_t, internal, 5666, 5679
Couldn't classify 5477, 5645
Sorry, prediction snap_scaffold_495-snap.2-T1 fails validation.
(ATG)	 AC	557-571	GT	TGG
(TGC)	 AG	4690-4815	GT	AAG
(ACA)	 AG	5477-5645	GT	AGG
-recovered snap_scaffold_495-snap.2-T1, initial, 557, 571
-recovered snap_scaffold_495-snap.2-T1, internal, 4690, 4815
-recovered snap_scaffold_495-snap.2-T1, internal, 5477, 5645
Valid prediction for GeneMark_model.107793_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61919-T1
Couldn't classify 5935, 6066
Sorry, prediction Augustus_model.g41158.t1 fails validation.
(ATG)	 GG	1702-1768	GT	AGG
(AGA)	 AG	3388-3455	GT	AGG
(AAC)	 AG	4398-4461	GT	GGG
(GTG)	 AG	4961-5035	GT	CAG
(ACA)	 AG	5935-6066	GT	CTG
-recovered Augustus_model.g41158.t1, initial, 1702, 1768
-recovered Augustus_model.g41158.t1, internal, 3388, 3455
-recovered Augustus_model.g41158.t1, internal, 4398, 4461
-recovered Augustus_model.g41158.t1, internal, 4961, 5035
-recovered Augustus_model.g41158.t1, internal, 5935, 6066
Valid prediction for GeneMark_model.107794_t
Valid prediction for GeneMark_model.107792_t
Valid prediction for snap_scaffold_495-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4778, rend_intergenic: 557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6479
-exon list size: 38


building trellis

2.5    
5.0    
7.5    
10.0    
12.5    
15.0    
17.5    
20.0    
22.5    
25.0    
27.5    
30.0    
32.5    
35.0    
37.5    
40.0    
42.5    
45.0    
47.5    
50.0    
52.5    
55.0    
57.5    
60.0    
62.5    
65.0    
67.5    
70.0    
72.5    
75.0    
77.5    
80.0    
82.5    
85.0    
87.5    
90.0    
92.5    
95.0    
97.5    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4778, rend_intergenic: 557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support