-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_494

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107790_t
Couldn't classify 5266, 5586
Sorry, prediction snap_scaffold_494-snap.2-T1 fails validation.
(ATG)	 GC	2362-2464	GT	GGG
(GCG)	 AG	3380-3879	GT	CGG
(AGC)	 AG	4162-4234	GT	CGG
(CTT)	 AG	5266-5586	GT	TCG
-recovered snap_scaffold_494-snap.2-T1, initial, 2362, 2464
-recovered snap_scaffold_494-snap.2-T1, internal, 3380, 3879
-recovered snap_scaffold_494-snap.2-T1, internal, 4162, 4234
-recovered snap_scaffold_494-snap.2-T1, internal, 5266, 5586

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 292, 369
Sorry, prediction GeneMark_model.107791_t fails validation.
(ACT)	 AG	292-369	GT	GTG
(GGG)	 AG	404-418	GT	TGG
(GCC)	 AG	1948-2121	GT	TGG
(GGC)	 AG	2156-2296	GT	CAG
(GGG)	 AG	2481-2562	CA	AAC
-recovered GeneMark_model.107791_t, terminal, 2481, 2562
-recovered GeneMark_model.107791_t, internal, 292, 369
-recovered GeneMark_model.107791_t, internal, 404, 418
-recovered GeneMark_model.107791_t, internal, 1948, 2121
-recovered GeneMark_model.107791_t, internal, 2156, 2296
Valid prediction for Augustus_model.g41157.t1
Valid prediction for GlimmerHMM_glimmerT_61918-T1
Couldn't classify 864, 1227
Sorry, prediction snap_scaffold_494-snap.1-T1 fails validation.
(CAA)	 AG	864-1227	GT	TTG
(ATG)	 AG	1845-2121	GT	TGG
(CCC)	 AG	3059-3157	GT	TGG
(GAA)	 AG	6104-6243	CA	GAC
-recovered snap_scaffold_494-snap.1-T1, initial, 1845, 2121
-recovered snap_scaffold_494-snap.1-T1, terminal, 6104, 6243
-recovered snap_scaffold_494-snap.1-T1, internal, 864, 1227
-recovered snap_scaffold_494-snap.1-T1, internal, 1845, 2121
-recovered snap_scaffold_494-snap.1-T1, internal, 3059, 3157
Couldn't classify 5405, 5437
Sorry, prediction GeneMark_model.107789_t fails validation.
(ATG)	 GA	4751-4863	GT	GCG
(AGA)	 AG	5139-5267	GT	GAG
(AGA)	 AG	5405-5437	GT	GAG
-recovered GeneMark_model.107789_t, initial, 4751, 4863
-recovered GeneMark_model.107789_t, internal, 5139, 5267
-recovered GeneMark_model.107789_t, internal, 5405, 5437

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5617, rend_intergenic: 2362  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6480
-exon list size: 38


building trellis

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-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5617, rend_intergenic: 2362  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support