-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_493

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107787_t
Valid prediction for Augustus_model.g41155.t1
Valid prediction for Augustus_model.g41156.t1
Valid prediction for GeneMark_model.107788_t
Couldn't classify 4226, 6341
Sorry, prediction GlimmerHMM_glimmerT_61917-T1 fails validation.
(ATG)	 CG	3538-4167	GT	GTG
(GAA)	 AG	4226-6341	GT	AGG
-recovered GlimmerHMM_glimmerT_61917-T1, initial, 3538, 4167
-recovered GlimmerHMM_glimmerT_61917-T1, internal, 4226, 6341
Valid prediction for GlimmerHMM_glimmerT_61916-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_493-snap.5-T1
Valid prediction for snap_scaffold_493-snap.4-T1
Valid prediction for snap_scaffold_493-snap.2-T1
Valid prediction for snap_scaffold_493-snap.1-T1
Valid prediction for snap_scaffold_493-snap.3-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6497
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support