-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_491

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107781_t
Couldn't classify 6123, 6290
Sorry, prediction GlimmerHMM_glimmerT_61913-T1 fails validation.
(ATG)	 AG	703-721	GT	TAG
(CTG)	 AG	6123-6290	GT	AGG
-recovered GlimmerHMM_glimmerT_61913-T1, initial, 703, 721
-recovered GlimmerHMM_glimmerT_61913-T1, internal, 703, 721
-recovered GlimmerHMM_glimmerT_61913-T1, internal, 6123, 6290
Couldn't classify 6301, 6343
Sorry, prediction GeneMark_model.107783_t fails validation.
(ATG)	 CA	6117-6136	GT	CTG
(GGA)	 AG	6177-6224	GT	GGG
(GAA)	 AG	6247-6279	GT	AAG
(GAG)	 AG	6301-6343	GT	AGG
-recovered GeneMark_model.107783_t, initial, 6117, 6136
-recovered GeneMark_model.107783_t, internal, 6177, 6224
-recovered GeneMark_model.107783_t, internal, 6247, 6279
-recovered GeneMark_model.107783_t, internal, 6301, 6343
Valid prediction for snap_scaffold_491-snap.1-T1
Couldn't classify 52, 243
Sorry, prediction GeneMark_model.107779_t fails validation.
(GGA)	 AG	52-243	GT	CTG
(GGA)	 AG	350-556	GT	GAG
(AGA)	 AG	584-722	TG	AGT
-recovered GeneMark_model.107779_t, terminal, 584, 722
-recovered GeneMark_model.107779_t, internal, 52, 243
-recovered GeneMark_model.107779_t, internal, 350, 556

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107782_t
Valid prediction for GeneMark_model.107780_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6522
-exon list size: 55


building trellis

1.8    
3.5    
5.3    
7.0    
8.8    
10.5    
12.3    
14.0    
15.8    
17.5    
19.3    
21.1    
22.8    
24.6    
26.3    
28.1    
29.8    
31.6    
33.3    
35.1    
36.8    
38.6    
40.4    
42.1    
43.9    
45.6    
47.4    
49.1    
50.9    
52.6    
54.4    
56.1    
57.9    
59.6    
61.4    
63.2    
64.9    
66.7    
68.4    
70.2    
71.9    
73.7    
75.4    
77.2    
78.9    
80.7    
82.5    
84.2    
86.0    
87.7    
89.5    
91.2    
93.0    
94.7    
96.5    
98.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support