-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_49

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_49-snap.4-T1
Valid prediction for snap_scaffold_49-snap.3-T1
Valid prediction for GeneMark_model.106262_t
Valid prediction for snap_scaffold_49-snap.1-T1
Valid prediction for Augustus_model.g40612.t1
Valid prediction for Augustus_model.g40611.t1
Couldn't classify 1541, 1621
Sorry, prediction GeneMark_model.106260_t fails validation.
(TCG)	 AG	1541-1621	GT	TTG
(GCT)	 AG	2037-2084	GT	GGG
(GCC)	 AG	2312-2329	CG	AAC
-recovered GeneMark_model.106260_t, terminal, 2312, 2329
-recovered GeneMark_model.106260_t, internal, 1541, 1621
-recovered GeneMark_model.106260_t, internal, 2037, 2084
Couldn't classify 27845, 28376
Sorry, prediction GlimmerHMM_glimmerT_61056-T1 fails validation.
(ATG)	 CA	11041-11158	GT	CAG
(AGT)	 AG	14726-14834	GT	AGG
(GAT)	 AG	15577-15693	GT	GGG
(ATG)	 AG	18833-18962	GT	AGG
(AGG)	 AG	22143-22222	GT	AGG
(GGC)	 AG	23656-23769	GT	AGG
(GAT)	 AG	23947-24063	GT	GGG
(AGA)	 AG	25840-25903	GT	CAG
(AAG)	 AG	27845-28376	GT	AGG
-recovered GlimmerHMM_glimmerT_61056-T1, initial, 11041, 11158
-recovered GlimmerHMM_glimmerT_61056-T1, initial, 18833, 18962
-recovered GlimmerHMM_glimmerT_61056-T1, internal, 14726, 14834
-recovered GlimmerHMM_glimmerT_61056-T1, internal, 15577, 15693
-recovered GlimmerHMM_glimmerT_61056-T1, internal, 18833, 18962
-recovered GlimmerHMM_glimmerT_61056-T1, internal, 22143, 22222
-recovered GlimmerHMM_glimmerT_61056-T1, internal, 23656, 23769
-recovered GlimmerHMM_glimmerT_61056-T1, internal, 23947, 24063
-recovered GlimmerHMM_glimmerT_61056-T1, internal, 25840, 25903
-recovered GlimmerHMM_glimmerT_61056-T1, internal, 27845, 28376
Valid prediction for GeneMark_model.106261_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61055-T1
Couldn't classify 7123, 7194
Sorry, prediction snap_scaffold_49-snap.2-T1 fails validation.
(CAC)	 AG	7123-7194	GT	TTG
(GCT)	 AG	9565-9654	GT	CTG
(CTC)	 AG	10045-10074	AT	AAA
-recovered snap_scaffold_49-snap.2-T1, terminal, 10045, 10074
-recovered snap_scaffold_49-snap.2-T1, internal, 7123, 7194
-recovered snap_scaffold_49-snap.2-T1, internal, 9565, 9654

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 28496
-exon list size: 41


building trellis

2.3    
4.7    
7.0    
9.3    
11.6    
14.0    
16.3    
18.6    
20.9    
23.3    
25.6    
27.9    
30.2    
32.6    
34.9    
37.2    
39.5    
41.9    
44.2    
46.5    
48.8    
51.2    
53.5    
55.8    
58.1    
60.5    
62.8    
65.1    
67.4    
69.8    
72.1    
74.4    
76.7    
79.1    
81.4    
83.7    
86.0    
88.4    
90.7    
93.0    
95.3    
97.7    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 18832
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 2 predictions from path traversal
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support