-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_486

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 360, 497
Sorry, prediction snap_scaffold_486-snap.2-T1 fails validation.
(ACA)	 AG	360-497	GT	AGG
(ATA)	 AG	728-865	GT	TGG
(ATA)	 AG	1146-1285	GT	GTG
(CCA)	 AG	3879-4211	AC	AGA
-recovered snap_scaffold_486-snap.2-T1, terminal, 3879, 4211
-recovered snap_scaffold_486-snap.2-T1, internal, 360, 497
-recovered snap_scaffold_486-snap.2-T1, internal, 728, 865
-recovered snap_scaffold_486-snap.2-T1, internal, 1146, 1285
Couldn't classify 360, 497
Sorry, prediction Augustus_model.g41151.t1 fails validation.
(ACA)	 AG	360-497	GT	AGG
(ATA)	 AG	728-865	GT	TGG
(ACG)	 AG	1193-1289	GT	GGG
(TCG)	 AG	3827-4211	AC	AGA
-recovered Augustus_model.g41151.t1, terminal, 3827, 4211
-recovered Augustus_model.g41151.t1, internal, 360, 497
-recovered Augustus_model.g41151.t1, internal, 728, 865
-recovered Augustus_model.g41151.t1, internal, 1193, 1289
Couldn't classify 360, 497
Couldn't classify 6453, 6556
Sorry, prediction GeneMark_model.107766_t fails validation.
(ACA)	 AG	360-497	GT	AGG
(ATA)	 AG	728-865	GT	TGG
(ATA)	 AG	1146-1285	GT	GTG
(CCA)	 AG	3879-4207	GT	GAG
(AGG)	 AG	6122-6151	GT	GAG
(GAG)	 AG	6182-6199	GT	GGG
(GAG)	 AG	6453-6556	GC	GAG
-recovered GeneMark_model.107766_t, terminal, 6122, 6151
-recovered GeneMark_model.107766_t, internal, 360, 497
-recovered GeneMark_model.107766_t, internal, 728, 865
-recovered GeneMark_model.107766_t, internal, 1146, 1285
-recovered GeneMark_model.107766_t, internal, 3879, 4207
-recovered GeneMark_model.107766_t, internal, 6122, 6151
-recovered GeneMark_model.107766_t, internal, 6182, 6199
-recovered GeneMark_model.107766_t, internal, 6453, 6556
Valid prediction for snap_scaffold_486-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_61906-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2375, 2666
Couldn't classify 6139, 6262
Sorry, prediction snap_scaffold_486-snap.1-T1 fails validation.
(AGC)	 AG	2375-2666	GT	AGG
(AAG)	 AG	5681-5814	GT	CAG
(CGA)	 AG	6139-6262	GT	AGG
-recovered snap_scaffold_486-snap.1-T1, internal, 2375, 2666
-recovered snap_scaffold_486-snap.1-T1, internal, 5681, 5814
-recovered snap_scaffold_486-snap.1-T1, internal, 6139, 6262

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4199, rend_intergenic: 360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6573
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4199, rend_intergenic: 360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support