-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_485

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41150.t1
Couldn't classify 1088, 1120
Sorry, prediction GeneMark_model.107763_t fails validation.
(GGT)	 AG	1088-1120	GT	AGG
(GTT)	 AG	1143-1148	GT	GAG
(GGA)	 AG	1220-1324	GT	AAG
(AGA)	 AG	1535-1748	GG	GAG
-recovered GeneMark_model.107763_t, terminal, 1535, 1748
-recovered GeneMark_model.107763_t, internal, 1088, 1120
-recovered GeneMark_model.107763_t, internal, 1143, 1148
-recovered GeneMark_model.107763_t, internal, 1220, 1324
Couldn't classify 6383, 6457
Sorry, prediction GeneMark_model.107765_t fails validation.
(ATG)	 TG	4553-4618	GT	AGG
(GGG)	 AG	5609-5745	GT	GAG
(GAG)	 AG	5773-5784	GT	AGG
(GGG)	 AG	5805-5921	GT	CTG
(GAG)	 AG	6045-6050	GT	GAG
(GAA)	 AG	6232-6294	GT	GAG
(GGA)	 AG	6322-6360	GT	AGG
(GGG)	 AG	6383-6457	GT	GAG
-recovered GeneMark_model.107765_t, initial, 4553, 4618
-recovered GeneMark_model.107765_t, internal, 5609, 5745
-recovered GeneMark_model.107765_t, internal, 5773, 5784
-recovered GeneMark_model.107765_t, internal, 5805, 5921
-recovered GeneMark_model.107765_t, internal, 6045, 6050
-recovered GeneMark_model.107765_t, internal, 6232, 6294
-recovered GeneMark_model.107765_t, internal, 6322, 6360
-recovered GeneMark_model.107765_t, internal, 6383, 6457
Couldn't classify 1202, 1281
Sorry, prediction snap_scaffold_485-snap.2-T1 fails validation.
(AAA)	 AG	1202-1281	GT	AGG
(GTG)	 AG	4125-4204	GT	AGG
(TCG)	 AG	4478-4618	GT	AGG
(GAT)	 AG	5725-5925	TG	GAT
-recovered snap_scaffold_485-snap.2-T1, terminal, 5725, 5925
-recovered snap_scaffold_485-snap.2-T1, internal, 1202, 1281
-recovered snap_scaffold_485-snap.2-T1, internal, 4125, 4204
-recovered snap_scaffold_485-snap.2-T1, internal, 4478, 4618
Couldn't classify 4478, 4618
Sorry, prediction GlimmerHMM_glimmerT_61905-T1 fails validation.
(ATG)	 AC	2209-2256	GT	CGG
(GTT)	 AG	4097-4204	GT	AGG
(TCG)	 AG	4478-4618	GT	AGG
-recovered GlimmerHMM_glimmerT_61905-T1, initial, 2209, 2256
-recovered GlimmerHMM_glimmerT_61905-T1, internal, 4097, 4204
-recovered GlimmerHMM_glimmerT_61905-T1, internal, 4478, 4618

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 646, 721
Sorry, prediction snap_scaffold_485-snap.1-T1 fails validation.
(TTC)	 AG	646-721	GT	TGG
(GAT)	 AG	2026-2214	GT	ACG
(GAT)	 AG	5554-5823	GG	AGG
-recovered snap_scaffold_485-snap.1-T1, terminal, 5554, 5823
-recovered snap_scaffold_485-snap.1-T1, internal, 646, 721
-recovered snap_scaffold_485-snap.1-T1, internal, 2026, 2214
Valid prediction for GeneMark_model.107764_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5929, rend_intergenic: 1202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6574
-exon list size: 47


building trellis

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-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5929, rend_intergenic: 1202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support