-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_484

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 267, 342
Sorry, prediction Augustus_model.g41149.t1 fails validation.
(TTT)	 AG	267-342	GT	TGG
(GGG)	 AG	464-546	GT	ACG
(TTT)	 AG	707-806	GT	AGG
(GTC)	 AG	1263-1351	GG	GAG
-recovered Augustus_model.g41149.t1, terminal, 1263, 1351
-recovered Augustus_model.g41149.t1, internal, 267, 342
-recovered Augustus_model.g41149.t1, internal, 464, 546
-recovered Augustus_model.g41149.t1, internal, 707, 806
Couldn't classify 267, 342
Sorry, prediction snap_scaffold_484-snap.2-T1 fails validation.
(TTT)	 AG	267-342	GT	TGG
(GGG)	 AG	464-546	GT	ACG
(AAG)	 AG	723-811	GT	TGG
(TCA)	 AG	988-1049	GT	AGG
(GTC)	 AG	1263-1351	GG	GAG
-recovered snap_scaffold_484-snap.2-T1, terminal, 1263, 1351
-recovered snap_scaffold_484-snap.2-T1, internal, 267, 342
-recovered snap_scaffold_484-snap.2-T1, internal, 464, 546
-recovered snap_scaffold_484-snap.2-T1, internal, 723, 811
-recovered snap_scaffold_484-snap.2-T1, internal, 988, 1049
Couldn't classify 267, 342
Sorry, prediction GeneMark_model.107762_t fails validation.
(TTT)	 AG	267-342	GT	TGG
(GGG)	 AG	464-546	GT	ACG
(AGG)	 AG	786-806	GT	AGG
(AGA)	 AG	829-890	GT	TGG
(CCG)	 AG	910-920	GT	AGG
(GTC)	 AG	1263-1351	GG	GAG
-recovered GeneMark_model.107762_t, terminal, 1263, 1351
-recovered GeneMark_model.107762_t, internal, 267, 342
-recovered GeneMark_model.107762_t, internal, 464, 546
-recovered GeneMark_model.107762_t, internal, 786, 806
-recovered GeneMark_model.107762_t, internal, 829, 890
-recovered GeneMark_model.107762_t, internal, 910, 920
Couldn't classify 5182, 6584
Sorry, prediction Augustus_model.g41148.t1 fails validation.
(ATG)	 AT	5014-5076	GT	AGG
(AAT)	 AG	5182-6584		AC
-recovered Augustus_model.g41148.t1, initial, 5014, 5076
Valid prediction for GlimmerHMM_glimmerT_61902-T1
Couldn't classify 5182, 6574
Sorry, prediction snap_scaffold_484-snap.1-T1 fails validation.
(ATG)	 AT	5014-5076	GT	AGG
(AAT)	 AG	5182-6574	GT	GCG
-recovered snap_scaffold_484-snap.1-T1, initial, 5014, 5076
-recovered snap_scaffold_484-snap.1-T1, internal, 5182, 6574
Couldn't classify 267, 342
Sorry, prediction GlimmerHMM_glimmerT_61904-T1 fails validation.
(TTT)	 AG	267-342	GT	TGG
(GGG)	 AG	464-529	GT	CCG
(GTC)	 AG	1263-1351	GG	GAG
-recovered GlimmerHMM_glimmerT_61904-T1, terminal, 1263, 1351
-recovered GlimmerHMM_glimmerT_61904-T1, internal, 267, 342
-recovered GlimmerHMM_glimmerT_61904-T1, internal, 464, 529
Couldn't classify 5182, 6572
Sorry, prediction GeneMark_model.107761_t fails validation.
(ATG)	 TG	4864-4871	GT	AGG
(TCG)	 AG	5001-5076	GT	AGG
(AAT)	 AG	5182-6572	GC	AGG
-recovered GeneMark_model.107761_t, initial, 4864, 4871
-recovered GeneMark_model.107761_t, internal, 5001, 5076
-recovered GeneMark_model.107761_t, internal, 5182, 6572
Valid prediction for GlimmerHMM_glimmerT_61903-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6584
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support