-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_483

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_483-snap.3-T1
Valid prediction for GeneMark_model.107760_t
Valid prediction for GeneMark_model.107758_t
Valid prediction for snap_scaffold_483-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107759_t
Valid prediction for GlimmerHMM_glimmerT_61901-T1
Couldn't classify 751, 890
Couldn't classify 5393, 5440
Sorry, prediction snap_scaffold_483-snap.1-T1 fails validation.
(GCC)	 AG	751-890	GT	AGG
(CTC)	 AG	5393-5440	GT	GTG
-recovered snap_scaffold_483-snap.1-T1, internal, 751, 890
-recovered snap_scaffold_483-snap.1-T1, internal, 5393, 5440

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5841, rend_intergenic: 1610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6591
-exon list size: 39


building trellis

2.4    
4.9    
7.3    
9.8    
12.2    
14.6    
17.1    
19.5    
22.0    
24.4    
26.8    
29.3    
31.7    
34.1    
36.6    
39.0    
41.5    
43.9    
46.3    
48.8    
51.2    
53.7    
56.1    
58.5    
61.0    
63.4    
65.9    
68.3    
70.7    
73.2    
75.6    
78.0    
80.5    
82.9    
85.4    
87.8    
90.2    
92.7    
95.1    
97.6    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 5841, rend_intergenic: 1610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support