-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_482

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5305, 5497
Sorry, prediction Augustus_model.g41147.t1 fails validation.
(ATG)	 TA	4311-4365	GT	AGG
(TTG)	 AG	5003-5172	GT	AGG
(GCT)	 AG	5305-5497	GT	TGG
-recovered Augustus_model.g41147.t1, initial, 4311, 4365
-recovered Augustus_model.g41147.t1, internal, 5003, 5172
-recovered Augustus_model.g41147.t1, internal, 5305, 5497
Couldn't classify 5317, 5403
Sorry, prediction GeneMark_model.107757_t fails validation.
(ATG)	 AT	5075-5111	GT	AGG
(GCC)	 AG	5156-5178	GT	AGG
(ATC)	 AG	5317-5403	GT	ATG
-recovered GeneMark_model.107757_t, initial, 5075, 5111
-recovered GeneMark_model.107757_t, internal, 5156, 5178
-recovered GeneMark_model.107757_t, internal, 5317, 5403
Valid prediction for GlimmerHMM_glimmerT_61900-T1
Valid prediction for snap_scaffold_482-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6609
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support