-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_477

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3429, 3703
Couldn't classify 5941, 6149
Sorry, prediction snap_scaffold_477-snap.2-T1 fails validation.
(AAG)	 AG	3429-3703	GT	CTG
(TCA)	 AG	4779-4944	GT	TGG
(TCT)	 AG	5941-6149	GT	AGG
-recovered snap_scaffold_477-snap.2-T1, internal, 3429, 3703
-recovered snap_scaffold_477-snap.2-T1, internal, 4779, 4944
-recovered snap_scaffold_477-snap.2-T1, internal, 5941, 6149
Valid prediction for GeneMark_model.107742_t
Valid prediction for GeneMark_model.107740_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1755, 1886
Sorry, prediction Augustus_model.g41145.t1 fails validation.
(ATC)	 AG	1755-1886	GT	AGG
(TTC)	 AG	2287-2301	TT	AAT
-recovered Augustus_model.g41145.t1, terminal, 2287, 2301
-recovered Augustus_model.g41145.t1, internal, 1755, 1886
Couldn't classify 713, 720
Sorry, prediction snap_scaffold_477-snap.1-T1 fails validation.
(ACT)	 AG	713-720	GT	AGG
(ATC)	 AG	1755-1886	GT	AGG
(GCT)	 AG	5943-6131	AG	AGA
-recovered snap_scaffold_477-snap.1-T1, terminal, 5943, 6131
-recovered snap_scaffold_477-snap.1-T1, internal, 713, 720
-recovered snap_scaffold_477-snap.1-T1, internal, 1755, 1886
Valid prediction for GeneMark_model.107741_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5941, rend_intergenic: 3429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6653
-exon list size: 31


building trellis

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-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5941, rend_intergenic: 3429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support