-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_473

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 422, 611
Sorry, prediction snap_scaffold_473-snap.2-T1 fails validation.
(GTG)	 AG	422-611	GT	GGG
(AGT)	 AG	1302-1758	GT	GAG
(GAA)	 AG	2183-2370	GT	GAG
(TGT)	 AG	2778-2866	GG	AAG
-recovered snap_scaffold_473-snap.2-T1, terminal, 2778, 2866
-recovered snap_scaffold_473-snap.2-T1, internal, 422, 611
-recovered snap_scaffold_473-snap.2-T1, internal, 1302, 1758
-recovered snap_scaffold_473-snap.2-T1, internal, 2183, 2370
Valid prediction for GeneMark_model.107726_t
Valid prediction for GeneMark_model.107724_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6484, 6648
Sorry, prediction Augustus_model.g41141.t1 fails validation.
(ATG)	 TC	167-494	GT	AGG
(TTC)	 AG	879-1449	GT	AGG
(GTT)	 AG	1794-2031	GT	AGG
(GTG)	 AG	2404-2684	GT	AGG
(GGA)	 AG	2873-3050	GT	AGG
(TTC)	 AG	3843-3940	GT	AGG
(AGG)	 AG	4485-4529	GT	AGG
(GTA)	 AG	6101-6288	GT	TGG
(CAT)	 AG	6484-6648	GT	AGG
-recovered Augustus_model.g41141.t1, initial, 167, 494
-recovered Augustus_model.g41141.t1, internal, 879, 1449
-recovered Augustus_model.g41141.t1, internal, 1794, 2031
-recovered Augustus_model.g41141.t1, internal, 2404, 2684
-recovered Augustus_model.g41141.t1, internal, 2873, 3050
-recovered Augustus_model.g41141.t1, internal, 3843, 3940
-recovered Augustus_model.g41141.t1, internal, 4485, 4529
-recovered Augustus_model.g41141.t1, internal, 6101, 6288
-recovered Augustus_model.g41141.t1, internal, 6484, 6648
Couldn't classify 179, 494
Sorry, prediction GlimmerHMM_glimmerT_61891-T1 fails validation.
(CCC)	 AG	179-494	GT	AGG
(TTC)	 AG	879-1449	GT	AGG
(GTT)	 AG	1794-2031	GT	AGG
(GTG)	 AG	2404-2684	GT	AGG
(AGG)	 AG	4485-4529	GT	AGG
(GTA)	 AG	6101-6317	AA	AGA
-recovered GlimmerHMM_glimmerT_61891-T1, terminal, 6101, 6317
-recovered GlimmerHMM_glimmerT_61891-T1, internal, 179, 494
-recovered GlimmerHMM_glimmerT_61891-T1, internal, 879, 1449
-recovered GlimmerHMM_glimmerT_61891-T1, internal, 1794, 2031
-recovered GlimmerHMM_glimmerT_61891-T1, internal, 2404, 2684
-recovered GlimmerHMM_glimmerT_61891-T1, internal, 4485, 4529
Valid prediction for GeneMark_model.107725_t
Couldn't classify 6484, 6648
Sorry, prediction snap_scaffold_473-snap.1-T1 fails validation.
(ATG)	 GG	3245-3350	GT	TAG
(CGA)	 AG	3856-3940	GT	AGG
(AGG)	 AG	4485-4529	GT	AGG
(GTA)	 AG	6101-6288	GT	TGG
(CAT)	 AG	6484-6648	GT	AGG
-recovered snap_scaffold_473-snap.1-T1, initial, 3245, 3350
-recovered snap_scaffold_473-snap.1-T1, internal, 3856, 3940
-recovered snap_scaffold_473-snap.1-T1, internal, 4485, 4529
-recovered snap_scaffold_473-snap.1-T1, internal, 6101, 6288
-recovered snap_scaffold_473-snap.1-T1, internal, 6484, 6648
Valid prediction for snap_scaffold_473-snap.3-T1
Couldn't classify 6484, 6648
Sorry, prediction GeneMark_model.107723_t fails validation.
(ATG)	 GC	5515-5519	GT	CTG
(GTA)	 AG	6101-6288	GT	TGG
(CAT)	 AG	6484-6648	GT	AGG
-recovered GeneMark_model.107723_t, initial, 5515, 5519
-recovered GeneMark_model.107723_t, internal, 6101, 6288
-recovered GeneMark_model.107723_t, internal, 6484, 6648
Couldn't classify 179, 430
Sorry, prediction GeneMark_model.107727_t fails validation.
(CCC)	 AG	179-430	GT	AGG
(AGC)	 AG	457-494	GT	AGG
(GAT)	 AG	696-749	GT	AGG
(GGA)	 AG	774-787	GT	AGG
(TTC)	 AG	879-1453	AC	AAA
-recovered GeneMark_model.107727_t, terminal, 879, 1453
-recovered GeneMark_model.107727_t, internal, 179, 430
-recovered GeneMark_model.107727_t, internal, 457, 494
-recovered GeneMark_model.107727_t, internal, 696, 749
-recovered GeneMark_model.107727_t, internal, 774, 787

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3451, rend_intergenic: 422  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6695
-exon list size: 72


building trellis

1.4    
2.7    
4.1    
5.4    
6.8    
8.1    
9.5    
10.8    
12.2    
13.5    
14.9    
16.2    
17.6    
18.9    
20.3    
21.6    
23.0    
24.3    
25.7    
27.0    
28.4    
29.7    
31.1    
32.4    
33.8    
35.1    
36.5    
37.8    
39.2    
40.5    
41.9    
43.2    
44.6    
45.9    
47.3    
48.6    
50.0    
51.4    
52.7    
54.1    
55.4    
56.8    
58.1    
59.5    
60.8    
62.2    
63.5    
64.9    
66.2    
67.6    
68.9    
70.3    
71.6    
73.0    
74.3    
75.7    
77.0    
78.4    
79.7    
81.1    
82.4    
83.8    
85.1    
86.5    
87.8    
89.2    
90.5    
91.9    
93.2    
94.6    
95.9    
97.3    
98.6    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3451, rend_intergenic: 422  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support