-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_472

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 6634, 6675
Sorry, prediction GeneMark_model.107722_t fails validation.
(ATG)	 GG	4366-4382	GT	CTG
(GGA)	 AG	5405-5416	GT	AGG
(GAA)	 AG	5455-5481	GT	AAG
(AGG)	 AG	5505-5591	GT	AAG
(AGA)	 AG	5616-5639	GT	GGG
(GGA)	 AG	6634-6675	GC	GGG
-recovered GeneMark_model.107722_t, initial, 4366, 4382
-recovered GeneMark_model.107722_t, internal, 5405, 5416
-recovered GeneMark_model.107722_t, internal, 5455, 5481
-recovered GeneMark_model.107722_t, internal, 5505, 5591
-recovered GeneMark_model.107722_t, internal, 5616, 5639
-recovered GeneMark_model.107722_t, internal, 6634, 6675
Valid prediction for snap_scaffold_472-snap.2-T1
Valid prediction for GeneMark_model.107720_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5836, 5987
Sorry, prediction GeneMark_model.107719_t fails validation.
(ATG)	 GC	5342-5401	GT	GAG
(GAC)	 AG	5467-5486	GT	GGG
(GGA)	 AG	5509-5676	GT	AGG
(CAT)	 AG	5715-5813	GT	GGG
(AAA)	 AG	5836-5987	GT	AGG
-recovered GeneMark_model.107719_t, initial, 5342, 5401
-recovered GeneMark_model.107719_t, internal, 5467, 5486
-recovered GeneMark_model.107719_t, internal, 5509, 5676
-recovered GeneMark_model.107719_t, internal, 5715, 5813
-recovered GeneMark_model.107719_t, internal, 5836, 5987
Valid prediction for GlimmerHMM_glimmerT_61890-T1
Couldn't classify 2251, 2353
Couldn't classify 5467, 5676
Sorry, prediction snap_scaffold_472-snap.1-T1 fails validation.
(ACT)	 AG	2251-2353	GT	GGG
(ACT)	 AG	3964-4245	GT	CCG
(GGG)	 AG	5305-5321	GT	GAG
(GAC)	 AG	5467-5676	GT	AGG
-recovered snap_scaffold_472-snap.1-T1, internal, 2251, 2353
-recovered snap_scaffold_472-snap.1-T1, internal, 3964, 4245
-recovered snap_scaffold_472-snap.1-T1, internal, 5305, 5321
-recovered snap_scaffold_472-snap.1-T1, internal, 5467, 5676

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4452, rend_intergenic: 2444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6702
-exon list size: 40


building trellis

2.4    
4.8    
7.1    
9.5    
11.9    
14.3    
16.7    
19.0    
21.4    
23.8    
26.2    
28.6    
31.0    
33.3    
35.7    
38.1    
40.5    
42.9    
45.2    
47.6    
50.0    
52.4    
54.8    
57.1    
59.5    
61.9    
64.3    
66.7    
69.0    
71.4    
73.8    
76.2    
78.6    
81.0    
83.3    
85.7    
88.1    
90.5    
92.9    
95.2    
97.6    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 4452, rend_intergenic: 2444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support