-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_471

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 6093, 6236
Sorry, prediction GeneMark_model.107718_t fails validation.
(ATG)	 AT	3946-3963	GT	AGG
(CCC)	 AG	4122-4168	GT	TCG
(GAG)	 AG	4731-4739	GT	AGG
(GAA)	 AG	4770-4775	GT	GAG
(AGA)	 AG	4799-4828	GT	GGG
(AGA)	 AG	4868-4929	GT	GAG
(ATC)	 AG	5989-6051	GT	GTG
(GGT)	 AG	6093-6236	GT	TTG
-recovered GeneMark_model.107718_t, initial, 3946, 3963
-recovered GeneMark_model.107718_t, internal, 4122, 4168
-recovered GeneMark_model.107718_t, internal, 4731, 4739
-recovered GeneMark_model.107718_t, internal, 4770, 4775
-recovered GeneMark_model.107718_t, internal, 4799, 4828
-recovered GeneMark_model.107718_t, internal, 4868, 4929
-recovered GeneMark_model.107718_t, internal, 5989, 6051
-recovered GeneMark_model.107718_t, internal, 6093, 6236
Valid prediction for GeneMark_model.107716_t
Valid prediction for snap_scaffold_471-snap.3-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6095, 6304
Sorry, prediction GeneMark_model.107715_t fails validation.
(ATG)	 AG	5859-5915	GT	CGG
(AAC)	 AG	5955-5977	GT	ACG
(AGG)	 AG	6095-6304	GT	GCG
-recovered GeneMark_model.107715_t, initial, 5859, 5915
-recovered GeneMark_model.107715_t, internal, 5859, 5915
-recovered GeneMark_model.107715_t, internal, 5955, 5977
-recovered GeneMark_model.107715_t, internal, 6095, 6304
Valid prediction for GeneMark_model.107717_t
Valid prediction for GlimmerHMM_glimmerT_61889-T1
Valid prediction for snap_scaffold_471-snap.2-T1
Valid prediction for Augustus_model.g41140.t1
Valid prediction for snap_scaffold_471-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5784, rend_intergenic: 872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6708
-exon list size: 55


building trellis

1.8    
3.5    
5.3    
7.0    
8.8    
10.5    
12.3    
14.0    
15.8    
17.5    
19.3    
21.1    
22.8    
24.6    
26.3    
28.1    
29.8    
31.6    
33.3    
35.1    
36.8    
38.6    
40.4    
42.1    
43.9    
45.6    
47.4    
49.1    
50.9    
52.6    
54.4    
56.1    
57.9    
59.6    
61.4    
63.2    
64.9    
66.7    
68.4    
70.2    
71.9    
73.7    
75.4    
77.2    
78.9    
80.7    
82.5    
84.2    
86.0    
87.7    
89.5    
91.2    
93.0    
94.7    
96.5    
98.2    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 5784, rend_intergenic: 872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support