-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_47

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106254_t
Valid prediction for GeneMark_model.106252_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_47-snap.1-T1
Valid prediction for Augustus_model.g40607.t1
Valid prediction for GlimmerHMM_glimmerT_61050-T1
Couldn't classify 955, 1152
Sorry, prediction GeneMark_model.106255_t fails validation.
(AGA)	 AG	955-1152	GT	AAG
(AAG)	 AG	1202-1246	GT	AAG
(ACA)	 AG	1282-1542	GT	GAG
(AGA)	 AG	1568-1720	GT	GGG
(GCT)	 AG	1788-1803	GT	CTG
(GAG)	 AG	1935-1954	GT	GAG
(AGA)	 AG	2903-2914	GT	CAG
(GCG)	 AG	3075-3150	CT	AGC
-recovered GeneMark_model.106255_t, terminal, 1935, 1954
-recovered GeneMark_model.106255_t, terminal, 3075, 3150
-recovered GeneMark_model.106255_t, internal, 955, 1152
-recovered GeneMark_model.106255_t, internal, 1202, 1246
-recovered GeneMark_model.106255_t, internal, 1282, 1542
-recovered GeneMark_model.106255_t, internal, 1568, 1720
-recovered GeneMark_model.106255_t, internal, 1788, 1803
-recovered GeneMark_model.106255_t, internal, 1935, 1954
-recovered GeneMark_model.106255_t, internal, 2903, 2914
Valid prediction for snap_scaffold_47-snap.2-T1
Couldn't classify 7901, 8004
Couldn't classify 11921, 11976
Sorry, prediction pasa_asmbl_43709.p1 fails validation.
(GAG)	 CA	7901-8004	GT	AGG
(GAT)	 AG	8470-8621	GT	TGG
(AGG)	 AG	8957-8992	GT	AGG
(AGG)	 AG	11489-11542	GT	AGG
(GAC)	 AG	11921-11976	TA	CGT
-recovered pasa_asmbl_43709.p1, internal, 8470, 8621
-recovered pasa_asmbl_43709.p1, internal, 8957, 8992
-recovered pasa_asmbl_43709.p1, internal, 11489, 11542
Valid prediction for GeneMark_model.106253_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 29000
-exon list size: 57


building trellis

1.7    
3.4    
5.1    
6.8    
8.5    
10.2    
11.9    
13.6    
15.3    
16.9    
18.6    
20.3    
22.0    
23.7    
25.4    
27.1    
28.8    
30.5    
32.2    
33.9    
35.6    
37.3    
39.0    
40.7    
42.4    
44.1    
45.8    
47.5    
49.2    
50.8    
52.5    
54.2    
55.9    
57.6    
59.3    
61.0    
62.7    
64.4    
66.1    
67.8    
69.5    
71.2    
72.9    
74.6    
76.3    
78.0    
79.7    
81.4    
83.1    
84.7    
86.4    
88.1    
89.8    
91.5    
93.2    
94.9    
96.6    
98.3    
-found 3 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 16973
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support
	-no exons in range 1 - 15672