-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_469 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 95, 236 Couldn't classify 5593, 5926 Sorry, prediction snap_scaffold_469-snap.2-T1 fails validation. (GCA) AG 95-236 GT AGG (GAC) AG 2739-2766 GT AGG (CCC) AG 5430-5588 GT CTG (AAG) AG 5593-5926 GT GGG -recovered snap_scaffold_469-snap.2-T1, internal, 95, 236 -recovered snap_scaffold_469-snap.2-T1, internal, 2739, 2766 -recovered snap_scaffold_469-snap.2-T1, internal, 5430, 5588 -recovered snap_scaffold_469-snap.2-T1, internal, 5593, 5926 Sorry, intron length (3) is less than minimum required (10) Couldn't classify 6065, 6116 Sorry, prediction GeneMark_model.107711_t fails validation. (ATG) AC 4390-4412 GT GAG (TGA) AG 4451-4489 GT GAG (GGA) AG 4521-4529 GT GAG (AGA) AG 4557-4607 GT CAG (AGA) AG 5052-5060 GC GAG (AGA) AG 5088-5168 GT GAG (ACA) AG 5196-5279 GT ATG (ACA) AG 5306-5519 GT CAG (AAG) AG 5593-5864 GT GAG (AGG) AG 5898-5981 GT GGG (GGA) AG 6009-6041 GT GGG (AAG) AG 6065-6116 GT AGG -recovered GeneMark_model.107711_t, initial, 4390, 4412 -recovered GeneMark_model.107711_t, internal, 4451, 4489 -recovered GeneMark_model.107711_t, internal, 4521, 4529 -recovered GeneMark_model.107711_t, internal, 4557, 4607 -recovered GeneMark_model.107711_t, internal, 5052, 5060 -recovered GeneMark_model.107711_t, internal, 5088, 5168 -recovered GeneMark_model.107711_t, internal, 5196, 5279 -recovered GeneMark_model.107711_t, internal, 5306, 5519 -recovered GeneMark_model.107711_t, internal, 5593, 5864 -recovered GeneMark_model.107711_t, internal, 5898, 5981 -recovered GeneMark_model.107711_t, internal, 6009, 6041 -recovered GeneMark_model.107711_t, internal, 6065, 6116 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Couldn't classify 6500, 6691 Sorry, prediction snap_scaffold_469-snap.1-T1 fails validation. (ATG) AG 3729-3850 GT AGG (TTG) AG 5138-5153 GT GGG (AGA) AG 5437-5595 GT AGG (AGC) AG 6500-6691 GT AGG -recovered snap_scaffold_469-snap.1-T1, initial, 3729, 3850 -recovered snap_scaffold_469-snap.1-T1, internal, 3729, 3850 -recovered snap_scaffold_469-snap.1-T1, internal, 5138, 5153 -recovered snap_scaffold_469-snap.1-T1, internal, 5437, 5595 -recovered snap_scaffold_469-snap.1-T1, internal, 6500, 6691 Couldn't classify 1122, 1381 Sorry, prediction snap_scaffold_469-snap.3-T1 fails validation. (ACT) AG 1122-1381 GT TGG (GAT) AG 3421-3594 TT GAT -recovered snap_scaffold_469-snap.3-T1, terminal, 3421, 3594 -recovered snap_scaffold_469-snap.3-T1, internal, 1122, 1381 Couldn't classify 6500, 6691 Sorry, prediction Augustus_model.g41138.t1 fails validation. (ATG) GA 6007-6030 GT AGG (AGC) AG 6500-6691 GT AGG -recovered Augustus_model.g41138.t1, initial, 6007, 6030 -recovered Augustus_model.g41138.t1, internal, 6500, 6691 Couldn't classify 1122, 1381 Sorry, prediction Augustus_model.g41139.t1 fails validation. (ACT) AG 1122-1381 GT TGG (ATG) AG 1736-1759 TC AAT -recovered Augustus_model.g41139.t1, terminal, 1736, 1759 -recovered Augustus_model.g41139.t1, internal, 1122, 1381 Couldn't classify 1122, 1381 Sorry, prediction GlimmerHMM_glimmerT_61888-T1 fails validation. (ACT) AG 1122-1381 GT TGG (AGC) AG 6500-6606 CG AGC -recovered GlimmerHMM_glimmerT_61888-T1, terminal, 6500, 6606 -recovered GlimmerHMM_glimmerT_61888-T1, internal, 1122, 1381 Couldn't classify 6500, 6691 Sorry, prediction GeneMark_model.107710_t fails validation. (ATG) GG 3490-3497 GT GAG (GAG) AG 3531-3590 GT CTG (GAG) AG 3654-3767 GT GGG (GAG) AG 3797-3850 GT AGG (GGG) AG 5449-5460 GT AGG (AGG) AG 5481-5534 GT AGG (GAG) AG 5561-5744 GT TGG (AGC) AG 6500-6691 GT AGG -recovered GeneMark_model.107710_t, initial, 3490, 3497 -recovered GeneMark_model.107710_t, internal, 3531, 3590 -recovered GeneMark_model.107710_t, internal, 3654, 3767 -recovered GeneMark_model.107710_t, internal, 3797, 3850 -recovered GeneMark_model.107710_t, internal, 5449, 5460 -recovered GeneMark_model.107710_t, internal, 5481, 5534 -recovered GeneMark_model.107710_t, internal, 5561, 5744 -recovered GeneMark_model.107710_t, internal, 6500, 6691 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3016, rend_intergenic: 95 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 5926, rend_intergenic: 3151 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 6744 -exon list size: 73 building trellis 1.3 2.7 4.0 5.3 6.7 8.0 9.3 10.7 12.0 13.3 14.7 16.0 17.3 18.7 20.0 21.3 22.7 24.0 25.3 26.7 28.0 29.3 30.7 32.0 33.3 34.7 36.0 37.3 38.7 40.0 41.3 42.7 44.0 45.3 46.7 48.0 49.3 50.7 52.0 53.3 54.7 56.0 57.3 58.7 60.0 61.3 62.7 64.0 65.3 66.7 68.0 69.3 70.7 72.0 73.3 74.7 76.0 77.3 78.7 80.0 81.3 82.7 84.0 85.3 86.7 88.0 89.3 90.7 92.0 93.3 94.7 96.0 97.3 98.7 -found 2 predictions from path traversal Error with prediction: snap lend_intergenic: 3016, rend_intergenic: 95 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 5926, rend_intergenic: 3151 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support