-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_467

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 69, 222
Sorry, prediction GeneMark_model.107706_t fails validation.
(GGC)	 AG	69-222	GT	CAG
(GAC)	 AG	315-370	GT	GGG
(GGA)	 AG	403-438	GT	ACG
(GTA)	 AG	775-864	GT	AGG
(GGG)	 AG	898-939	GT	GGG
(GAA)	 AG	2325-2913	GT	GAG
(CCA)	 AG	2995-3237	GC	AGG
-recovered GeneMark_model.107706_t, terminal, 2995, 3237
-recovered GeneMark_model.107706_t, internal, 69, 222
-recovered GeneMark_model.107706_t, internal, 315, 370
-recovered GeneMark_model.107706_t, internal, 403, 438
-recovered GeneMark_model.107706_t, internal, 775, 864
-recovered GeneMark_model.107706_t, internal, 898, 939
-recovered GeneMark_model.107706_t, internal, 2325, 2913
-recovered GeneMark_model.107706_t, internal, 2995, 3237
Couldn't classify 61, 222
Sorry, prediction snap_scaffold_467-snap.1-T1 fails validation.
(ACC)	 AG	61-222	GT	CAG
(GAC)	 AG	315-374	AG	AGA
-recovered snap_scaffold_467-snap.1-T1, terminal, 315, 374
-recovered snap_scaffold_467-snap.1-T1, internal, 61, 222
Couldn't classify 6448, 6597
Sorry, prediction snap_scaffold_467-snap.3-T1 fails validation.
(ATG)	 AC	722-774	GT	AGG
(CTT)	 AG	2130-2800	GT	GGG
(CCA)	 AG	2995-3113	GT	TGG
(GGT)	 AG	3132-3233	GT	GGG
(CAT)	 AG	6448-6597	GT	AGG
-recovered snap_scaffold_467-snap.3-T1, initial, 722, 774
-recovered snap_scaffold_467-snap.3-T1, internal, 2130, 2800
-recovered snap_scaffold_467-snap.3-T1, internal, 2995, 3113
-recovered snap_scaffold_467-snap.3-T1, internal, 3132, 3233
-recovered snap_scaffold_467-snap.3-T1, internal, 6448, 6597
Valid prediction for GeneMark_model.107708_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107707_t
Couldn't classify 3539, 3681
Sorry, prediction snap_scaffold_467-snap.2-T1 fails validation.
(CCT)	 AG	3539-3681	GT	CCG
(CTG)	 AG	3963-4072	GT	AGG
(GTG)	 AG	4509-4667	GT	CGG
(CTG)	 AG	4992-5069	GT	TGG
(AGG)	 AG	5926-6066	CA	GAC
-recovered snap_scaffold_467-snap.2-T1, terminal, 5926, 6066
-recovered snap_scaffold_467-snap.2-T1, internal, 3539, 3681
-recovered snap_scaffold_467-snap.2-T1, internal, 3963, 4072
-recovered snap_scaffold_467-snap.2-T1, internal, 4509, 4667
-recovered snap_scaffold_467-snap.2-T1, internal, 4992, 5069
Couldn't classify 3539, 3681
Sorry, prediction GlimmerHMM_glimmerT_61884-T1 fails validation.
(CCT)	 AG	3539-3681	GT	CCG
(CTG)	 AG	3963-4072	GT	AGG
(GTG)	 AG	4509-4667	GT	CGG
(CTG)	 AG	4992-5069	GT	TGG
(AGG)	 AG	5926-6046	GT	CTG
(GCA)	 AG	6430-6719	TA	AGT
-recovered GlimmerHMM_glimmerT_61884-T1, terminal, 6430, 6719
-recovered GlimmerHMM_glimmerT_61884-T1, internal, 3539, 3681
-recovered GlimmerHMM_glimmerT_61884-T1, internal, 3963, 4072
-recovered GlimmerHMM_glimmerT_61884-T1, internal, 4509, 4667
-recovered GlimmerHMM_glimmerT_61884-T1, internal, 4992, 5069
-recovered GlimmerHMM_glimmerT_61884-T1, internal, 5926, 6046
Couldn't classify 3462, 3681
Couldn't classify 5926, 6012
Sorry, prediction pasa_asmbl_43706.p1 fails validation.
(CAC)	 CA	3462-3681	GT	CCG
(CTG)	 AG	3963-4072	GT	AGG
(GTG)	 AG	4509-4667	GT	CGG
(CTG)	 AG	4992-5069	GT	TGG
(AGG)	 AG	5926-6012	GT	AGG
-recovered pasa_asmbl_43706.p1, internal, 3963, 4072
-recovered pasa_asmbl_43706.p1, internal, 4509, 4667
-recovered pasa_asmbl_43706.p1, internal, 4992, 5069
-recovered pasa_asmbl_43706.p1, internal, 5926, 6012
Valid prediction for Augustus_model.g41135.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3219, rend_intergenic: 722  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6757
-exon list size: 41


building trellis

2.3    
4.7    
7.0    
9.3    
11.6    
14.0    
16.3    
18.6    
20.9    
23.3    
25.6    
27.9    
30.2    
32.6    
34.9    
37.2    
39.5    
41.9    
44.2    
46.5    
48.8    
51.2    
53.5    
55.8    
58.1    
60.5    
62.8    
65.1    
67.4    
69.8    
72.1    
74.4    
76.7    
79.1    
81.4    
83.7    
86.0    
88.4    
90.7    
93.0    
95.3    
97.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3219, rend_intergenic: 722  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support