-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_466

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107704_t
Valid prediction for GeneMark_model.107703_t
Couldn't classify 3589, 3703
Sorry, prediction snap_scaffold_466-snap.1-T1 fails validation.
(CAT)	 AG	3589-3703	GT	GGG
(ACG)	 AG	5973-6127	AA	AGA
-recovered snap_scaffold_466-snap.1-T1, terminal, 5973, 6127
-recovered snap_scaffold_466-snap.1-T1, internal, 3589, 3703

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 944, 958
Sorry, prediction GeneMark_model.107705_t fails validation.
(GTT)	 AG	944-958	GT	AGG
(GTT)	 AG	989-1003	GT	AGG
(AAA)	 AG	1210-1215	GT	GGG
(AGA)	 AG	1272-1283	GT	AGG
(ACA)	 AG	1314-1382	GT	CAG
(GAT)	 AG	1405-1441	GA	GAG
-recovered GeneMark_model.107705_t, terminal, 1405, 1441
-recovered GeneMark_model.107705_t, internal, 944, 958
-recovered GeneMark_model.107705_t, internal, 989, 1003
-recovered GeneMark_model.107705_t, internal, 1210, 1215
-recovered GeneMark_model.107705_t, internal, 1272, 1283
-recovered GeneMark_model.107705_t, internal, 1314, 1382

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6760
-exon list size: 23


building trellis

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28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
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56.0    
60.0    
64.0    
68.0    
72.0    
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80.0    
84.0    
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92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support