-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_465

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107700_t
Couldn't classify 6338, 6418
Sorry, prediction GeneMark_model.107702_t fails validation.
(ATG)	 CG	5962-5993	GT	GAG
(GCA)	 AG	6047-6061	GT	CGG
(AGA)	 AG	6250-6261	GT	AGG
(AGA)	 AG	6292-6312	GT	GAG
(AGG)	 AG	6338-6418	GT	GAG
-recovered GeneMark_model.107702_t, initial, 5962, 5993
-recovered GeneMark_model.107702_t, internal, 6047, 6061
-recovered GeneMark_model.107702_t, internal, 6250, 6261
-recovered GeneMark_model.107702_t, internal, 6292, 6312
-recovered GeneMark_model.107702_t, internal, 6338, 6418
Couldn't classify 26, 465
Couldn't classify 4144, 4296
Sorry, prediction snap_scaffold_465-snap.1-T1 fails validation.
(GAG)	 AG	26-465	GT	TTG
(GGC)	 AG	588-702	GT	AAG
(GAG)	 AG	2757-3258	GT	ACG
(AAT)	 AG	3942-4072	GT	CGG
(GTC)	 AG	4144-4296	GT	GGG
-recovered snap_scaffold_465-snap.1-T1, internal, 26, 465
-recovered snap_scaffold_465-snap.1-T1, internal, 588, 702
-recovered snap_scaffold_465-snap.1-T1, internal, 2757, 3258
-recovered snap_scaffold_465-snap.1-T1, internal, 3942, 4072
-recovered snap_scaffold_465-snap.1-T1, internal, 4144, 4296
Couldn't classify 34, 436
Sorry, prediction GeneMark_model.107699_t fails validation.
(GAA)	 AG	34-436	GT	ACG
(GAG)	 AG	2757-3395	CA	GAC
-recovered GeneMark_model.107699_t, terminal, 2757, 3395
-recovered GeneMark_model.107699_t, internal, 34, 436

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61883-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61883-T1 1564-2003-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_61882-T1
Valid prediction for snap_scaffold_465-snap.2-T1
add_exon() Sorry, snap_scaffold_465-snap.2-T1 1615-2003-terminal-1 is invalid.
Valid prediction for GeneMark_model.107701_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6768
-exon list size: 32


building trellis

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26.5    
29.4    
32.4    
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38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
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67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
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97.1    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support