-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_463

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1267, 1285
Sorry, prediction GeneMark_model.107695_t fails validation.
(GTC)	 AG	1267-1285	GT	AGG
(GTC)	 AG	1431-1479	GT	TGG
(ACA)	 AG	1872-1903	GT	GGG
(AGG)	 AG	1932-1946	GT	GGG
(GGT)	 AG	1968-2000	GT	AGG
(AGG)	 AG	2029-2118	GT	GGG
(GAC)	 AG	2152-2160	GT	GGG
(GAA)	 AG	2183-2200	GT	GGG
(GGG)	 AG	2221-2355	GT	GGG
(TGG)	 AG	2379-2429	GT	GGG
(GAC)	 AG	2457-2528	GT	GCG
(GGT)	 AG	2549-2626	GT	GGG
(AGG)	 AG	2652-2666	GT	GGG
(GAG)	 AG	2703-2771	GT	GGG
(GGG)	 AG	2792-3736	GT	TGG
(TGT)	 AG	4652-4797	GT	ATG
(CAT)	 AG	4910-4919	GT	ACG
(ATT)	 AG	5956-5998	CT	AGC
-recovered GeneMark_model.107695_t, terminal, 5956, 5998
-recovered GeneMark_model.107695_t, internal, 1267, 1285
-recovered GeneMark_model.107695_t, internal, 1431, 1479
-recovered GeneMark_model.107695_t, internal, 1872, 1903
-recovered GeneMark_model.107695_t, internal, 1932, 1946
-recovered GeneMark_model.107695_t, internal, 1968, 2000
-recovered GeneMark_model.107695_t, internal, 2029, 2118
-recovered GeneMark_model.107695_t, internal, 2152, 2160
-recovered GeneMark_model.107695_t, internal, 2183, 2200
-recovered GeneMark_model.107695_t, internal, 2221, 2355
-recovered GeneMark_model.107695_t, internal, 2379, 2429
-recovered GeneMark_model.107695_t, internal, 2457, 2528
-recovered GeneMark_model.107695_t, internal, 2549, 2626
-recovered GeneMark_model.107695_t, internal, 2652, 2666
-recovered GeneMark_model.107695_t, internal, 2703, 2771
-recovered GeneMark_model.107695_t, internal, 2792, 3736
-recovered GeneMark_model.107695_t, internal, 4652, 4797
-recovered GeneMark_model.107695_t, internal, 4910, 4919
Couldn't classify 1872, 2239
Sorry, prediction snap_scaffold_463-snap.1-T1 fails validation.
(ACA)	 AG	1872-2239	GT	GGG
(GAA)	 AG	2420-3698	GT	CGG
(GTG)	 AG	4748-4797	GT	ATG
(CAT)	 AG	4910-4931	TT	GAT
-recovered snap_scaffold_463-snap.1-T1, terminal, 4910, 4931
-recovered snap_scaffold_463-snap.1-T1, internal, 1872, 2239
-recovered snap_scaffold_463-snap.1-T1, internal, 2420, 3698
-recovered snap_scaffold_463-snap.1-T1, internal, 4748, 4797

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61878-T1
Valid prediction for Augustus_model.g41131.t1
Couldn't classify 1834, 1927
Sorry, prediction GlimmerHMM_glimmerT_61879-T1 fails validation.
(AAA)	 AG	1834-1927	GT	AGG
(TCC)	 AG	2010-2137	GT	AGG
(AGA)	 AG	3126-3239	TG	GAT
-recovered GlimmerHMM_glimmerT_61879-T1, terminal, 3126, 3239
-recovered GlimmerHMM_glimmerT_61879-T1, internal, 1834, 1927
-recovered GlimmerHMM_glimmerT_61879-T1, internal, 2010, 2137
Couldn't classify 1834, 1927
Sorry, prediction snap_scaffold_463-snap.2-T1 fails validation.
(AAA)	 AG	1834-1927	GT	AGG
(TCC)	 AG	2010-2137	GT	AGG
(AGA)	 AG	3126-3239	TG	GAT
-recovered snap_scaffold_463-snap.2-T1, terminal, 3126, 3239
-recovered snap_scaffold_463-snap.2-T1, internal, 1834, 1927
-recovered snap_scaffold_463-snap.2-T1, internal, 2010, 2137

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4931, rend_intergenic: 3544  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6782
-exon list size: 52


building trellis

1.9    
3.7    
5.6    
7.4    
9.3    
11.1    
13.0    
14.8    
16.7    
18.5    
20.4    
22.2    
24.1    
25.9    
27.8    
29.6    
31.5    
33.3    
35.2    
37.0    
38.9    
40.7    
42.6    
44.4    
46.3    
48.1    
50.0    
51.9    
53.7    
55.6    
57.4    
59.3    
61.1    
63.0    
64.8    
66.7    
68.5    
70.4    
72.2    
74.1    
75.9    
77.8    
79.6    
81.5    
83.3    
85.2    
87.0    
88.9    
90.7    
92.6    
94.4    
96.3    
98.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4931, rend_intergenic: 3544  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support