-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_462 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_462-snap.3-T1 Sorry, intron length (8) is less than minimum required (10) Valid prediction for snap_scaffold_462-snap.2-T1 Couldn't classify 35, 136 Sorry, prediction GeneMark_model.107693_t fails validation. (GGA) AG 35-136 GT CAG (GCT) AG 247-360 GT GAG (GAG) AG 388-411 GT GAG (GAG) AG 439-462 GT GAG (GAG) AG 484-495 GT GAG (GAG) AG 517-540 GT GAG (GAG) AG 568-669 GT CCG (GAG) AG 1153-1164 GT CGG (GAG) AG 1189-1206 GT AGG (GAG) AG 1231-1281 GT GGG (AAG) AG 1318-1422 GT GAG (AAG) AG 1445-1472 GT GAG (GGC) AG 3006-3089 GT ATG (CCC) AG 3113-3178 CA AAC -recovered GeneMark_model.107693_t, terminal, 247, 360 -recovered GeneMark_model.107693_t, terminal, 388, 411 -recovered GeneMark_model.107693_t, terminal, 439, 462 -recovered GeneMark_model.107693_t, terminal, 484, 495 -recovered GeneMark_model.107693_t, terminal, 517, 540 -recovered GeneMark_model.107693_t, terminal, 1189, 1206 -recovered GeneMark_model.107693_t, terminal, 3113, 3178 -recovered GeneMark_model.107693_t, internal, 35, 136 -recovered GeneMark_model.107693_t, internal, 247, 360 -recovered GeneMark_model.107693_t, internal, 388, 411 -recovered GeneMark_model.107693_t, internal, 439, 462 -recovered GeneMark_model.107693_t, internal, 484, 495 -recovered GeneMark_model.107693_t, internal, 517, 540 -recovered GeneMark_model.107693_t, internal, 568, 669 -recovered GeneMark_model.107693_t, internal, 1153, 1164 -recovered GeneMark_model.107693_t, internal, 1189, 1206 -recovered GeneMark_model.107693_t, internal, 1231, 1281 -recovered GeneMark_model.107693_t, internal, 1318, 1422 -recovered GeneMark_model.107693_t, internal, 1445, 1472 -recovered GeneMark_model.107693_t, internal, 3006, 3089 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Couldn't classify 113, 570 Couldn't classify 6461, 6594 Sorry, prediction Augustus_model.g41130.t1 fails validation. (ACA) AG 113-570 GT TGG (CTT) AG 1604-1759 GT AGG (GGC) AG 1923-2045 GT AGG (GTG) AG 2420-2656 GT AGG (CTG) AG 3723-3849 GT AGG (CTC) AG 6461-6594 GT AGG -recovered Augustus_model.g41130.t1, internal, 113, 570 -recovered Augustus_model.g41130.t1, internal, 1604, 1759 -recovered Augustus_model.g41130.t1, internal, 1923, 2045 -recovered Augustus_model.g41130.t1, internal, 2420, 2656 -recovered Augustus_model.g41130.t1, internal, 3723, 3849 -recovered Augustus_model.g41130.t1, internal, 6461, 6594 Couldn't classify 6461, 6594 Sorry, prediction snap_scaffold_462-snap.1-T1 fails validation. (ATG) GT 1178-1257 GT CGG (GAG) AG 1651-1759 GT AGG (GGC) AG 1923-2045 GT AGG (GTG) AG 2420-2656 GT AGG (ACT) AG 3106-3315 GT CGG (CTG) AG 3723-3849 GT AGG (CTC) AG 6461-6594 GT AGG -recovered snap_scaffold_462-snap.1-T1, initial, 1178, 1257 -recovered snap_scaffold_462-snap.1-T1, internal, 1651, 1759 -recovered snap_scaffold_462-snap.1-T1, internal, 1923, 2045 -recovered snap_scaffold_462-snap.1-T1, internal, 2420, 2656 -recovered snap_scaffold_462-snap.1-T1, internal, 3106, 3315 -recovered snap_scaffold_462-snap.1-T1, internal, 3723, 3849 -recovered snap_scaffold_462-snap.1-T1, internal, 6461, 6594 Couldn't classify 90, 747 Sorry, prediction GlimmerHMM_glimmerT_61877-T1 fails validation. (GAT) AG 90-747 GT GGG (GGC) AG 1923-2045 GT AGG (GTG) AG 2420-2656 GT AGG (CTG) AG 3723-3849 GT AGG (CTC) AG 6461-6660 CA AAC -recovered GlimmerHMM_glimmerT_61877-T1, terminal, 6461, 6660 -recovered GlimmerHMM_glimmerT_61877-T1, internal, 90, 747 -recovered GlimmerHMM_glimmerT_61877-T1, internal, 1923, 2045 -recovered GlimmerHMM_glimmerT_61877-T1, internal, 2420, 2656 -recovered GlimmerHMM_glimmerT_61877-T1, internal, 3723, 3849 Couldn't classify 61, 503 Sorry, prediction GeneMark_model.107694_t fails validation. (GAG) AG 61-503 GT GGG (GAC) AG 532-570 GT TGG (GGG) AG 601-624 GT GAG (ATG) AG 647-661 GT CTG (ACC) AG 682-747 GT GGG (GAA) AG 806-838 GT GGG (AGC) AG 1219-1257 GT CGG (GAG) AG 1303-1314 GT GGG (GAG) AG 1651-1759 GT AGG (GGC) AG 1923-2045 GT AGG (GTG) AG 2420-2656 GT AGG (ATG) AG 2952-2962 GT GTG (GGA) AG 3169-3315 GT CGG (GGG) AG 3371-3464 CC GAC -recovered GeneMark_model.107694_t, initial, 647, 661 -recovered GeneMark_model.107694_t, initial, 2952, 2962 -recovered GeneMark_model.107694_t, terminal, 3371, 3464 -recovered GeneMark_model.107694_t, internal, 61, 503 -recovered GeneMark_model.107694_t, internal, 532, 570 -recovered GeneMark_model.107694_t, internal, 601, 624 -recovered GeneMark_model.107694_t, internal, 647, 661 -recovered GeneMark_model.107694_t, internal, 682, 747 -recovered GeneMark_model.107694_t, internal, 806, 838 -recovered GeneMark_model.107694_t, internal, 1219, 1257 -recovered GeneMark_model.107694_t, internal, 1303, 1314 -recovered GeneMark_model.107694_t, internal, 1651, 1759 -recovered GeneMark_model.107694_t, internal, 1923, 2045 -recovered GeneMark_model.107694_t, internal, 2420, 2656 -recovered GeneMark_model.107694_t, internal, 2952, 2962 -recovered GeneMark_model.107694_t, internal, 3169, 3315 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5612, rend_intergenic: 315 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 6789 -exon list size: 89 building trellis 1.1 2.2 3.3 4.4 5.5 6.6 7.7 8.8 9.9 11.0 12.1 13.2 14.3 15.4 16.5 17.6 18.7 19.8 20.9 22.0 23.1 24.2 25.3 26.4 27.5 28.6 29.7 30.8 31.9 33.0 34.1 35.2 36.3 37.4 38.5 39.6 40.7 41.8 42.9 44.0 45.1 46.2 47.3 48.4 49.5 50.5 51.6 52.7 53.8 54.9 56.0 57.1 58.2 59.3 60.4 61.5 62.6 63.7 64.8 65.9 67.0 68.1 69.2 70.3 71.4 72.5 73.6 74.7 75.8 76.9 78.0 79.1 80.2 81.3 82.4 83.5 84.6 85.7 86.8 87.9 89.0 90.1 91.2 92.3 93.4 94.5 95.6 96.7 97.8 98.9 -found 2 predictions from path traversal Error with prediction: snap lend_intergenic: 5612, rend_intergenic: 315 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 2 predictions persist after filtering for low support