-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_461

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107688_t
Valid prediction for GeneMark_model.107689_t
Valid prediction for GeneMark_model.107691_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107690_t
Couldn't classify 9, 32
Sorry, prediction GeneMark_model.107692_t fails validation.
(GAG)	 AG	9-32	GT	CAG
(GAG)	 AG	54-77	GT	CAG
(AGG)	 AG	98-121	GT	CAG
(GAG)	 AG	144-164	GT	CAG
(GAG)	 AG	186-213	AG	AAA
-recovered GeneMark_model.107692_t, terminal, 186, 213
-recovered GeneMark_model.107692_t, internal, 9, 32
-recovered GeneMark_model.107692_t, internal, 54, 77
-recovered GeneMark_model.107692_t, internal, 98, 121
-recovered GeneMark_model.107692_t, internal, 144, 164
Valid prediction for GeneMark_model.107687_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6813
-exon list size: 43


building trellis

2.2    
4.4    
6.7    
8.9    
11.1    
13.3    
15.6    
17.8    
20.0    
22.2    
24.4    
26.7    
28.9    
31.1    
33.3    
35.6    
37.8    
40.0    
42.2    
44.4    
46.7    
48.9    
51.1    
53.3    
55.6    
57.8    
60.0    
62.2    
64.4    
66.7    
68.9    
71.1    
73.3    
75.6    
77.8    
80.0    
82.2    
84.4    
86.7    
88.9    
91.1    
93.3    
95.6    
97.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support