-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_46

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40604.t1
Valid prediction for Augustus_model.g40606.t1
Valid prediction for snap_scaffold_46-snap.2-T1
Couldn't classify 29285, 29514
Sorry, prediction GeneMark_model.106251_t fails validation.
(ATG)	 TC	26428-26458	GT	AGG
(GTG)	 AG	29285-29514	GT	AGG
-recovered GeneMark_model.106251_t, initial, 26428, 26458
-recovered GeneMark_model.106251_t, internal, 29285, 29514
Valid prediction for GlimmerHMM_glimmerT_61047-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_61043-T1
Valid prediction for GlimmerHMM_glimmerT_61042-T1
Valid prediction for Augustus_model.g40601.t1
Valid prediction for GlimmerHMM_glimmerT_61044-T1
Valid prediction for GeneMark_model.106246_t
Valid prediction for GeneMark_model.106249_t
Valid prediction for snap_scaffold_46-snap.7-T1
Valid prediction for GlimmerHMM_glimmerT_61049-T1
Couldn't classify 29285, 29537
Sorry, prediction snap_scaffold_46-snap.9-T1 fails validation.
(ATG)	 TG	29145-29199	GT	AGG
(GTG)	 AG	29285-29537	GT	ATG
-recovered snap_scaffold_46-snap.9-T1, initial, 29145, 29199
-recovered snap_scaffold_46-snap.9-T1, internal, 29285, 29537

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 29148, 29717
Sorry, prediction snap_scaffold_46-snap.1-T1 fails validation.
(ATG)	 CT	28779-28796	GT	CGG
(ACT)	 AG	29148-29717	GT	GAG
-recovered snap_scaffold_46-snap.1-T1, initial, 28779, 28796
-recovered snap_scaffold_46-snap.1-T1, internal, 29148, 29717
Valid prediction for GeneMark_model.106247_t
Valid prediction for snap_scaffold_46-snap.6-T1
Valid prediction for GlimmerHMM_glimmerT_61046-T1
Valid prediction for GeneMark_model.106250_t
Valid prediction for GlimmerHMM_glimmerT_61045-T1
Valid prediction for snap_scaffold_46-snap.8-T1
Valid prediction for snap_scaffold_46-snap.5-T1
Valid prediction for snap_scaffold_46-snap.3-T1
Couldn't classify 29148, 29760
Sorry, prediction Augustus_model.g40600.t1 fails validation.
(ATG)	 AA	28385-28399	GT	CGG
(ACT)	 AG	29148-29760		TG
-recovered Augustus_model.g40600.t1, initial, 28385, 28399
Valid prediction for GlimmerHMM_glimmerT_61048-T1
Couldn't classify 29114, 29742
Sorry, prediction GeneMark_model.106245_t fails validation.
(ATG)	 CT	28779-28798	GT	GTG
(CGA)	 AG	29114-29742	GC	CAG
-recovered GeneMark_model.106245_t, initial, 28779, 28798
-recovered GeneMark_model.106245_t, internal, 29114, 29742
Valid prediction for Augustus_model.g40603.t1
Valid prediction for Augustus_model.g40605.t1
Valid prediction for snap_scaffold_46-snap.4-T1
Valid prediction for Augustus_model.g40602.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 25202, rend_intergenic: 21353  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 29760
-exon list size: 117


building trellis

0.8    
1.7    
2.5    
3.4    
4.2    
5.0    
5.9    
6.7    
7.6    
8.4    
9.2    
10.1    
10.9    
11.8    
12.6    
13.4    
14.3    
15.1    
16.0    
16.8    
17.6    
18.5    
19.3    
20.2    
21.0    
21.8    
22.7    
23.5    
24.4    
25.2    
26.1    
26.9    
27.7    
28.6    
29.4    
30.3    
31.1    
31.9    
32.8    
33.6    
34.5    
35.3    
36.1    
37.0    
37.8    
38.7    
39.5    
40.3    
41.2    
42.0    
42.9    
43.7    
44.5    
45.4    
46.2    
47.1    
47.9    
48.7    
49.6    
50.4    
51.3    
52.1    
52.9    
53.8    
54.6    
55.5    
56.3    
57.1    
58.0    
58.8    
59.7    
60.5    
61.3    
62.2    
63.0    
63.9    
64.7    
65.5    
66.4    
67.2    
68.1    
68.9    
69.7    
70.6    
71.4    
72.3    
73.1    
73.9    
74.8    
75.6    
76.5    
77.3    
78.2    
79.0    
79.8    
80.7    
81.5    
82.4    
83.2    
84.0    
84.9    
85.7    
86.6    
87.4    
88.2    
89.1    
89.9    
90.8    
91.6    
92.4    
93.3    
94.1    
95.0    
95.8    
96.6    
97.5    
98.3    
99.2    
-found 8 predictions from path traversal
Error with prediction: snap lend_intergenic: 25202, rend_intergenic: 21353  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 8 predictions persist after filtering for low support