-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_459

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107684_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5287, 5350
Sorry, prediction GeneMark_model.107683_t fails validation.
(ATG)	 AT	3407-3456	GT	GGG
(ACT)	 AG	3486-3491	GT	ATG
(GGA)	 AG	3527-3829	GT	ATG
(AGA)	 AG	4315-4542	GT	CTG
(AGG)	 AG	4616-4792	GC	AGG
(AGA)	 AG	4818-4970	GT	GGG
(AAA)	 AG	4994-5035	GT	GAG
(GGG)	 AG	5287-5350	GT	CAG
-recovered GeneMark_model.107683_t, initial, 3407, 3456
-recovered GeneMark_model.107683_t, internal, 3486, 3491
-recovered GeneMark_model.107683_t, internal, 3527, 3829
-recovered GeneMark_model.107683_t, internal, 4315, 4542
-recovered GeneMark_model.107683_t, internal, 4616, 4792
-recovered GeneMark_model.107683_t, internal, 4818, 4970
-recovered GeneMark_model.107683_t, internal, 4994, 5035
-recovered GeneMark_model.107683_t, internal, 5287, 5350
Couldn't classify 4552, 4891
Sorry, prediction snap_scaffold_459-snap.1-T1 fails validation.
(ATG)	 AC	2079-2099	GT	GGG
(GAA)	 AG	4552-4891	GT	CGG
-recovered snap_scaffold_459-snap.1-T1, initial, 2079, 2099
-recovered snap_scaffold_459-snap.1-T1, internal, 4552, 4891

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6829
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support