-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_458

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_458-snap.2-T1
Valid prediction for GeneMark_model.107682_t
Valid prediction for GlimmerHMM_glimmerT_61874-T1
Couldn't classify 58, 81
Sorry, prediction GeneMark_model.107678_t fails validation.
(GCC)	 AG	58-81	GT	CGG
(GAA)	 AG	197-250	GT	CGG
(AGA)	 AG	405-610	GT	GGG
(GGC)	 AG	700-722	GT	ACG
(AGG)	 AG	894-973	GT	CCG
(AGA)	 AG	1154-1330	GT	CGG
(GAG)	 AG	1354-1572	GT	GAG
(TCT)	 AG	1756-1870	GC	GAG
add_exon() Sorry, GeneMark_model.107678_t 1354-1572-terminal-1 is invalid.
-recovered GeneMark_model.107678_t, terminal, 1354, 1572
-recovered GeneMark_model.107678_t, terminal, 1756, 1870
-recovered GeneMark_model.107678_t, internal, 58, 81
-recovered GeneMark_model.107678_t, internal, 197, 250
-recovered GeneMark_model.107678_t, internal, 405, 610
-recovered GeneMark_model.107678_t, internal, 700, 722
-recovered GeneMark_model.107678_t, internal, 894, 973
-recovered GeneMark_model.107678_t, internal, 1154, 1330
-recovered GeneMark_model.107678_t, internal, 1354, 1572
-recovered GeneMark_model.107678_t, internal, 1756, 1870
Valid prediction for Augustus_model.g41127.t1
Valid prediction for GeneMark_model.107680_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107679_t
Valid prediction for GeneMark_model.107681_t
Valid prediction for snap_scaffold_458-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4890, rend_intergenic: 718  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6838
-exon list size: 53


building trellis

1.8    
3.6    
5.5    
7.3    
9.1    
10.9    
12.7    
14.5    
16.4    
18.2    
20.0    
21.8    
23.6    
25.5    
27.3    
29.1    
30.9    
32.7    
34.5    
36.4    
38.2    
40.0    
41.8    
43.6    
45.5    
47.3    
49.1    
50.9    
52.7    
54.5    
56.4    
58.2    
60.0    
61.8    
63.6    
65.5    
67.3    
69.1    
70.9    
72.7    
74.5    
76.4    
78.2    
80.0    
81.8    
83.6    
85.5    
87.3    
89.1    
90.9    
92.7    
94.5    
96.4    
98.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4890, rend_intergenic: 718  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support