-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_457

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41126.t1
Couldn't classify 88, 200
Sorry, prediction Augustus_model.g41125.t1 fails validation.
(AGA)	 AG	88-200	GT	GGG
(GGC)	 AG	2162-2452	CA	AAC
-recovered Augustus_model.g41125.t1, terminal, 2162, 2452
-recovered Augustus_model.g41125.t1, internal, 88, 200
Valid prediction for GeneMark_model.107677_t
Couldn't classify 88, 145
Sorry, prediction GeneMark_model.107676_t fails validation.
(AGA)	 AG	88-145	GT	CTG
(GAG)	 AG	399-437	GT	GAG
(GAG)	 AG	458-526	GT	GAG
(GAG)	 AG	551-589	GT	AGG
(AGA)	 AG	753-785	GT	GAG
(AAG)	 AG	811-924	GC	GGG
(AGA)	 AG	950-988	GT	GTG
(GGA)	 AG	1014-1040	GT	GTG
(AGA)	 AG	1066-1203	GT	AGG
(CGA)	 AG	1253-1285	GC	ATG
(AGG)	 AG	1522-1542	GT	GAG
(AGA)	 AG	1569-1586	GT	AAG
(AAA)	 AG	1698-1958	GT	GAG
(AGA)	 AG	1983-2048	GT	CAG
(AGG)	 AG	2075-2123	GT	CTG
(GGC)	 AG	2162-2452	CA	AAC
-recovered GeneMark_model.107676_t, terminal, 2162, 2452
-recovered GeneMark_model.107676_t, internal, 88, 145
-recovered GeneMark_model.107676_t, internal, 399, 437
-recovered GeneMark_model.107676_t, internal, 458, 526
-recovered GeneMark_model.107676_t, internal, 551, 589
-recovered GeneMark_model.107676_t, internal, 753, 785
-recovered GeneMark_model.107676_t, internal, 811, 924
-recovered GeneMark_model.107676_t, internal, 950, 988
-recovered GeneMark_model.107676_t, internal, 1014, 1040
-recovered GeneMark_model.107676_t, internal, 1066, 1203
-recovered GeneMark_model.107676_t, internal, 1253, 1285
-recovered GeneMark_model.107676_t, internal, 1522, 1542
-recovered GeneMark_model.107676_t, internal, 1569, 1586
-recovered GeneMark_model.107676_t, internal, 1698, 1958
-recovered GeneMark_model.107676_t, internal, 1983, 2048
-recovered GeneMark_model.107676_t, internal, 2075, 2123
Valid prediction for snap_scaffold_457-snap.3-T1
Couldn't classify 4409, 4586
Sorry, prediction GlimmerHMM_glimmerT_61873-T1 fails validation.
(ATG)	 AT	3374-3596	GT	TGG
(GCT)	 AG	4409-4586	GT	AGG
-recovered GlimmerHMM_glimmerT_61873-T1, initial, 3374, 3596
-recovered GlimmerHMM_glimmerT_61873-T1, internal, 4409, 4586
Couldn't classify 42, 200
Sorry, prediction snap_scaffold_457-snap.1-T1 fails validation.
(AAC)	 AG	42-200	GT	GGG
(GGC)	 AG	327-589	GT	AGG
(GAG)	 AG	1488-1586	GT	AAG
(GGC)	 AG	2162-2452	CA	AAC
-recovered snap_scaffold_457-snap.1-T1, terminal, 2162, 2452
-recovered snap_scaffold_457-snap.1-T1, internal, 42, 200
-recovered snap_scaffold_457-snap.1-T1, internal, 327, 589
-recovered snap_scaffold_457-snap.1-T1, internal, 1488, 1586
Valid prediction for GlimmerHMM_glimmerT_61872-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6710, 6771
Sorry, prediction snap_scaffold_457-snap.2-T1 fails validation.
(ATG)	 TG	4411-4416	GT	AAG
(AGT)	 AG	4443-4571	GT	AGG
(GCT)	 AG	6710-6771	GT	AGG
-recovered snap_scaffold_457-snap.2-T1, initial, 4411, 4416
-recovered snap_scaffold_457-snap.2-T1, internal, 4443, 4571
-recovered snap_scaffold_457-snap.2-T1, internal, 6710, 6771

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2452, rend_intergenic: 82  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6852
-exon list size: 59


building trellis

1.6    
3.3    
4.9    
6.6    
8.2    
9.8    
11.5    
13.1    
14.8    
16.4    
18.0    
19.7    
21.3    
23.0    
24.6    
26.2    
27.9    
29.5    
31.1    
32.8    
34.4    
36.1    
37.7    
39.3    
41.0    
42.6    
44.3    
45.9    
47.5    
49.2    
50.8    
52.5    
54.1    
55.7    
57.4    
59.0    
60.7    
62.3    
63.9    
65.6    
67.2    
68.9    
70.5    
72.1    
73.8    
75.4    
77.0    
78.7    
80.3    
82.0    
83.6    
85.2    
86.9    
88.5    
90.2    
91.8    
93.4    
95.1    
96.7    
98.4    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 2452, rend_intergenic: 82  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support