-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_455

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107674_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5766, 6061
Sorry, prediction pasa_asmbl_43699.p1 fails validation.
(GGT)	 CA	5766-6061	GT	AGG
(CTC)	 AG	6298-6427	TG	AGT
-recovered pasa_asmbl_43699.p1, terminal, 6298, 6427
Couldn't classify 3617, 3707
Sorry, prediction GlimmerHMM_glimmerT_61870-T1 fails validation.
(ACC)	 AG	3617-3707	GT	CAG
(GTG)	 AG	5767-6061	GT	AGG
(CTC)	 AG	6298-6427	TG	AGT
-recovered GlimmerHMM_glimmerT_61870-T1, terminal, 6298, 6427
-recovered GlimmerHMM_glimmerT_61870-T1, internal, 3617, 3707
-recovered GlimmerHMM_glimmerT_61870-T1, internal, 5767, 6061
Couldn't classify 5767, 6061
Couldn't classify 6298, 6426
Sorry, prediction snap_scaffold_455-snap.1-T1 fails validation.
(GTG)	 AG	5767-6061	GT	AGG
(CTC)	 AG	6298-6426	GT	TAG
-recovered snap_scaffold_455-snap.1-T1, internal, 5767, 6061
-recovered snap_scaffold_455-snap.1-T1, internal, 6298, 6426
Valid prediction for HiQ_model.g41124.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6873
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support