-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_454

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5862, 5975
Sorry, prediction Augustus_model.g41123.t1 fails validation.
(ATG)	 AC	4487-4521	GT	CGG
(GTG)	 AG	5695-5729	GT	AGG
(TGA)	 AG	5862-5975	GT	AGG
-recovered Augustus_model.g41123.t1, initial, 4487, 4521
-recovered Augustus_model.g41123.t1, internal, 5695, 5729
-recovered Augustus_model.g41123.t1, internal, 5862, 5975

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6788, 6855
Sorry, prediction snap_scaffold_454-snap.1-T1 fails validation.
(ATG)	 GA	2046-2541	GT	TGG
(GGG)	 AG	6788-6855	GT	GGG
-recovered snap_scaffold_454-snap.1-T1, initial, 2046, 2541
-recovered snap_scaffold_454-snap.1-T1, internal, 6788, 6855
Valid prediction for GlimmerHMM_glimmerT_61869-T1
Valid prediction for GeneMark_model.107673_t
Valid prediction for snap_scaffold_454-snap.3-T1
add_exon() Sorry, snap_scaffold_454-snap.3-T1 797-1116-terminal-1 is invalid.
Valid prediction for snap_scaffold_454-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_61868-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6873
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support