-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_453

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 505, 659
Sorry, prediction snap_scaffold_453-snap.2-T1 fails validation.
(ATC)	 AG	505-659	GT	CAG
(GGG)	 AG	3572-3727	GT	GGG
(AAA)	 AG	5880-6037	AT	AGA
-recovered snap_scaffold_453-snap.2-T1, terminal, 5880, 6037
-recovered snap_scaffold_453-snap.2-T1, internal, 505, 659
-recovered snap_scaffold_453-snap.2-T1, internal, 3572, 3727
Couldn't classify 6096, 6146
Sorry, prediction GeneMark_model.107672_t fails validation.
(ATG)	 TG	5712-5722	GT	AGG
(AGG)	 AG	5941-6033	GT	AGG
(GGA)	 AG	6096-6146	GT	CTG
-recovered GeneMark_model.107672_t, initial, 5712, 5722
-recovered GeneMark_model.107672_t, internal, 5941, 6033
-recovered GeneMark_model.107672_t, internal, 6096, 6146
Valid prediction for GeneMark_model.107670_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_453-snap.3-T1
Couldn't classify 6522, 6644
Sorry, prediction snap_scaffold_453-snap.1-T1 fails validation.
(ATG)	 AA	5046-5054	GT	ATG
(GTA)	 AG	5756-5892	GT	GGG
(ATT)	 AG	6283-6411	GT	TTG
(AAT)	 AG	6522-6644	GT	GGG
-recovered snap_scaffold_453-snap.1-T1, initial, 5046, 5054
-recovered snap_scaffold_453-snap.1-T1, internal, 5756, 5892
-recovered snap_scaffold_453-snap.1-T1, internal, 6283, 6411
-recovered snap_scaffold_453-snap.1-T1, internal, 6522, 6644
Valid prediction for GeneMark_model.107671_t
Couldn't classify 6675, 6683
Sorry, prediction GeneMark_model.107669_t fails validation.
(ATG)	 GA	6523-6644	GT	GGG
(GAC)	 AG	6675-6683	GT	GAG
-recovered GeneMark_model.107669_t, initial, 6523, 6644
-recovered GeneMark_model.107669_t, internal, 6675, 6683

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1830, rend_intergenic: 505  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6037, rend_intergenic: 2695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6875
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1830, rend_intergenic: 505  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6037, rend_intergenic: 2695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support