-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_452

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61866-T1
Valid prediction for snap_scaffold_452-snap.1-T1
Couldn't classify 6455, 6547
Sorry, prediction GeneMark_model.107668_t fails validation.
(ATG)	 GG	5495-5499	GT	TTG
(AGA)	 AG	6319-6405	GT	GAG
(AGA)	 AG	6455-6547	GT	GTG
-recovered GeneMark_model.107668_t, initial, 5495, 5499
-recovered GeneMark_model.107668_t, internal, 6319, 6405
-recovered GeneMark_model.107668_t, internal, 6455, 6547

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41122.t1
Valid prediction for snap_scaffold_452-snap.2-T1
Sorry, intron length (9) is less than minimum required (10)
Couldn't classify 2984, 3301
Sorry, prediction pasa_asmbl_43698.p1 fails validation.
(AGT)	 TC	2984-3301	TG	TAT
Couldn't classify 2187, 2534
Sorry, prediction GlimmerHMM_glimmerT_61867-T1 fails validation.
(GTC)	 AG	2187-2534	GT	AGG
(ACA)	 AG	2615-3039	TG	GAT
-recovered GlimmerHMM_glimmerT_61867-T1, terminal, 2615, 3039
-recovered GlimmerHMM_glimmerT_61867-T1, internal, 2187, 2534
Valid prediction for GeneMark_model.107667_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6685, rend_intergenic: 2180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6903
-exon list size: 31


building trellis

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72.7    
75.8    
78.8    
81.8    
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87.9    
90.9    
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97.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6685, rend_intergenic: 2180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support