-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_451

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1578, 1667
Sorry, prediction GeneMark_model.107663_t fails validation.
(AGA)	 AG	1578-1667	GT	GAG
(GCG)	 AG	1787-1900	GC	GAG
(GAG)	 AG	1923-1971	AA	AGA
-recovered GeneMark_model.107663_t, terminal, 1923, 1971
-recovered GeneMark_model.107663_t, internal, 1578, 1667
-recovered GeneMark_model.107663_t, internal, 1787, 1900
Couldn't classify 2429, 2494
Couldn't classify 6751, 6906
Sorry, prediction snap_scaffold_451-snap.1-T1 fails validation.
(TCG)	 AG	2429-2494	GT	AGG
(CAA)	 AG	4691-4713	GT	AAG
(GAT)	 AG	6751-6906	GT	AGG
-recovered snap_scaffold_451-snap.1-T1, internal, 2429, 2494
-recovered snap_scaffold_451-snap.1-T1, internal, 4691, 4713
-recovered snap_scaffold_451-snap.1-T1, internal, 6751, 6906
Valid prediction for GeneMark_model.107665_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107664_t
Valid prediction for GeneMark_model.107666_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6917
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support