-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_45

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_45-snap.4-T1
Couldn't classify 29540, 29691
Sorry, prediction GlimmerHMM_glimmerT_61041-T1 fails validation.
(ATG)	 CA	27311-27422	GT	GGG
(CTG)	 AG	29540-29691	GT	CAG
-recovered GlimmerHMM_glimmerT_61041-T1, initial, 27311, 27422
-recovered GlimmerHMM_glimmerT_61041-T1, internal, 29540, 29691
Valid prediction for GlimmerHMM_glimmerT_61039-T1
Valid prediction for Augustus_model.g40599.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61040-T1
Valid prediction for GlimmerHMM_glimmerT_61036-T1
Valid prediction for snap_scaffold_45-snap.2-T1
Valid prediction for snap_scaffold_45-snap.3-T1
Valid prediction for Augustus_model.g40598.t1
Valid prediction for GlimmerHMM_glimmerT_61037-T1
Valid prediction for GeneMark_model.106244_t
Valid prediction for snap_scaffold_45-snap.1-T1
Couldn't classify 29196, 29448
Sorry, prediction GeneMark_model.106243_t fails validation.
(ATG)	 CT	26102-26118	GT	AAG
(GGT)	 AG	26849-26867	GT	TTG
(TAC)	 AG	29196-29448	GT	TGG
-recovered GeneMark_model.106243_t, initial, 26102, 26118
-recovered GeneMark_model.106243_t, internal, 26849, 26867
-recovered GeneMark_model.106243_t, internal, 29196, 29448
Valid prediction for GlimmerHMM_glimmerT_61038-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 31028
-exon list size: 31


building trellis

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48.5    
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57.6    
60.6    
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72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
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97.0    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support