-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_449

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 6618, 6710
Sorry, prediction GeneMark_model.107659_t fails validation.
(ATG)	 AG	4895-4950	GT	GAG
(GGG)	 AG	4984-5332	GT	TTG
(GCC)	 AG	5841-6016	GT	CTG
(GAG)	 AG	6521-6550	GT	AAG
(GGA)	 AG	6618-6710	GT	GCG
-recovered GeneMark_model.107659_t, initial, 4895, 4950
-recovered GeneMark_model.107659_t, internal, 4895, 4950
-recovered GeneMark_model.107659_t, internal, 4984, 5332
-recovered GeneMark_model.107659_t, internal, 5841, 6016
-recovered GeneMark_model.107659_t, internal, 6521, 6550
-recovered GeneMark_model.107659_t, internal, 6618, 6710
Couldn't classify 3623, 3710
Couldn't classify 6497, 6710
Sorry, prediction snap_scaffold_449-snap.1-T1 fails validation.
(GGT)	 AG	3623-3710	GT	AAG
(GGT)	 AG	4681-5390	GT	ATG
(ACA)	 AG	5674-6339	GT	CAG
(GAA)	 AG	6497-6710	GT	GCG
-recovered snap_scaffold_449-snap.1-T1, internal, 3623, 3710
-recovered snap_scaffold_449-snap.1-T1, internal, 4681, 5390
-recovered snap_scaffold_449-snap.1-T1, internal, 5674, 6339
-recovered snap_scaffold_449-snap.1-T1, internal, 6497, 6710

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107658_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6921
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support