-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_447

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107654_t
Couldn't classify 2372, 2476
Sorry, prediction snap_scaffold_447-snap.1-T1 fails validation.
(CTT)	 AG	2372-2476	GT	AGG
(GTG)	 AG	2605-2763	GT	AGG
(GCC)	 AG	3134-3217	GT	AGG
(ACG)	 AG	3621-3854	GA	AGG
-recovered snap_scaffold_447-snap.1-T1, terminal, 3621, 3854
-recovered snap_scaffold_447-snap.1-T1, internal, 2372, 2476
-recovered snap_scaffold_447-snap.1-T1, internal, 2605, 2763
-recovered snap_scaffold_447-snap.1-T1, internal, 3134, 3217
Valid prediction for snap_scaffold_447-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_61860-T1
Valid prediction for Augustus_model.g41118.t1
Valid prediction for GeneMark_model.107652_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107651_t
Valid prediction for GeneMark_model.107653_t
Couldn't classify 1820, 2073
Sorry, prediction snap_scaffold_447-snap.2-T1 fails validation.
(GGA)	 AG	1820-2073	GT	TGG
(TCT)	 AG	2448-2624	GT	GGG
(CGC)	 AG	3188-3309	GT	TCG
(ACG)	 AG	4213-4336	GA	AGG
-recovered snap_scaffold_447-snap.2-T1, terminal, 4213, 4336
-recovered snap_scaffold_447-snap.2-T1, internal, 1820, 2073
-recovered snap_scaffold_447-snap.2-T1, internal, 2448, 2624
-recovered snap_scaffold_447-snap.2-T1, internal, 3188, 3309

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3854, rend_intergenic: 2601  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5117, rend_intergenic: 3929  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6936
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3854, rend_intergenic: 2601  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5117, rend_intergenic: 3929  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support