-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_444

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 6680, 6856
Sorry, prediction snap_scaffold_444-snap.1-T1 fails validation.
(ATG)	 CA	5810-5817	GT	ATG
(AAA)	 AG	6314-6480	GT	AGG
(GAT)	 AG	6680-6856	GT	AGG
-recovered snap_scaffold_444-snap.1-T1, initial, 5810, 5817
-recovered snap_scaffold_444-snap.1-T1, internal, 6314, 6480
-recovered snap_scaffold_444-snap.1-T1, internal, 6680, 6856
Couldn't classify 6720, 6856
Sorry, prediction GlimmerHMM_glimmerT_61854-T1 fails validation.
(ATG)	 AC	4661-4701	GT	ATG
(GAT)	 AG	6720-6856	GT	AGG
-recovered GlimmerHMM_glimmerT_61854-T1, initial, 4661, 4701
-recovered GlimmerHMM_glimmerT_61854-T1, internal, 6720, 6856
Valid prediction for GeneMark_model.107646_t
Couldn't classify 6879, 6924
Sorry, prediction GeneMark_model.107647_t fails validation.
(ATG)	 AA	6235-6259	GT	TGG
(CGC)	 AG	6367-6421	GT	CTG
(AGG)	 AG	6752-6775	GT	AGG
(GGG)	 AG	6798-6824	GT	ATG
(AGG)	 AG	6845-6856	GT	AGG
(GTT)	 AG	6879-6924	GT	AGG
-recovered GeneMark_model.107647_t, initial, 6235, 6259
-recovered GeneMark_model.107647_t, internal, 6367, 6421
-recovered GeneMark_model.107647_t, internal, 6752, 6775
-recovered GeneMark_model.107647_t, internal, 6798, 6824
-recovered GeneMark_model.107647_t, internal, 6845, 6856
-recovered GeneMark_model.107647_t, internal, 6879, 6924

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41114.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6942
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support