-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_443

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3655, 3668
Couldn't classify 5708, 5862
Sorry, prediction snap_scaffold_443-snap.1-T1 fails validation.
(GCC)	 AG	3655-3668	GT	AGG
(GTA)	 AG	4569-4764	GT	GGG
(AGA)	 AG	5708-5862	GT	GGG
-recovered snap_scaffold_443-snap.1-T1, internal, 3655, 3668
-recovered snap_scaffold_443-snap.1-T1, internal, 4569, 4764
-recovered snap_scaffold_443-snap.1-T1, internal, 5708, 5862
Couldn't classify 6897, 6940
Sorry, prediction GeneMark_model.107645_t fails validation.
(ATG)	 GC	5651-5680	GC	TCG
(AGA)	 AG	5708-5727	GT	AGG
(AGA)	 AG	5751-5804	GT	AGG
(AGG)	 AG	5827-5862	GT	GGG
(AGA)	 AG	5892-5969	GT	ATG
(AGA)	 AG	6782-6802	GT	AGG
(GCA)	 AG	6849-6854	GT	AGG
(AGA)	 AG	6897-6940	GT	AGG
-recovered GeneMark_model.107645_t, initial, 5651, 5680
-recovered GeneMark_model.107645_t, internal, 5708, 5727
-recovered GeneMark_model.107645_t, internal, 5751, 5804
-recovered GeneMark_model.107645_t, internal, 5827, 5862
-recovered GeneMark_model.107645_t, internal, 5892, 5969
-recovered GeneMark_model.107645_t, internal, 6782, 6802
-recovered GeneMark_model.107645_t, internal, 6849, 6854
-recovered GeneMark_model.107645_t, internal, 6897, 6940
Valid prediction for GeneMark_model.107643_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107644_t
Couldn't classify 1267, 1302
Sorry, prediction snap_scaffold_443-snap.2-T1 fails validation.
(AGG)	 AG	1267-1302	GT	AGG
(AAG)	 AG	2367-2522	GG	AAG
-recovered snap_scaffold_443-snap.2-T1, terminal, 2367, 2522
-recovered snap_scaffold_443-snap.2-T1, internal, 1267, 1302
Couldn't classify 4976, 4981
Sorry, prediction GeneMark_model.107642_t fails validation.
(ATG)	 CC	2484-2506	GT	ATG
(GGG)	 AG	2542-2559	GT	AGG
(GAA)	 AG	2581-2742	GT	GGG
(AAG)	 AG	3222-3320	GT	AAG
(AGA)	 AG	3351-3362	GT	GAG
(AAC)	 AG	3386-3571	GC	GAG
(AGG)	 AG	4976-4981	GT	AGG
-recovered GeneMark_model.107642_t, initial, 2484, 2506
-recovered GeneMark_model.107642_t, internal, 2542, 2559
-recovered GeneMark_model.107642_t, internal, 2581, 2742
-recovered GeneMark_model.107642_t, internal, 3222, 3320
-recovered GeneMark_model.107642_t, internal, 3351, 3362
-recovered GeneMark_model.107642_t, internal, 3386, 3571
-recovered GeneMark_model.107642_t, internal, 4976, 4981

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5862, rend_intergenic: 4448  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6969
-exon list size: 55


building trellis

1.8    
3.5    
5.3    
7.0    
8.8    
10.5    
12.3    
14.0    
15.8    
17.5    
19.3    
21.1    
22.8    
24.6    
26.3    
28.1    
29.8    
31.6    
33.3    
35.1    
36.8    
38.6    
40.4    
42.1    
43.9    
45.6    
47.4    
49.1    
50.9    
52.6    
54.4    
56.1    
57.9    
59.6    
61.4    
63.2    
64.9    
66.7    
68.4    
70.2    
71.9    
73.7    
75.4    
77.2    
78.9    
80.7    
82.5    
84.2    
86.0    
87.7    
89.5    
91.2    
93.0    
94.7    
96.5    
98.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5862, rend_intergenic: 4448  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support