-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_442

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_442-snap.1-T1
Couldn't classify 6938, 6956
Sorry, prediction GeneMark_model.107641_t fails validation.
(ATG)	 GG	6684-6700	GT	GAG
(ATT)	 AG	6752-6760	GC	GAG
(AGG)	 AG	6784-6810	GT	GAG
(AGG)	 AG	6834-6860	GT	GAG
(AGG)	 AG	6884-6910	GT	GAG
(GGA)	 AG	6938-6956	GC	GAG
-recovered GeneMark_model.107641_t, initial, 6684, 6700
-recovered GeneMark_model.107641_t, internal, 6752, 6760
-recovered GeneMark_model.107641_t, internal, 6784, 6810
-recovered GeneMark_model.107641_t, internal, 6834, 6860
-recovered GeneMark_model.107641_t, internal, 6884, 6910
-recovered GeneMark_model.107641_t, internal, 6938, 6956

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107640_t
Couldn't classify 275, 391
Couldn't classify 1974, 2054
Sorry, prediction snap_scaffold_442-snap.2-T1 fails validation.
(GAC)	 AG	275-391	GT	AAG
(GTC)	 AG	1974-2054	GT	AAG
-recovered snap_scaffold_442-snap.2-T1, internal, 275, 391
-recovered snap_scaffold_442-snap.2-T1, internal, 1974, 2054
Valid prediction for GeneMark_model.107639_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6977
-exon list size: 37


building trellis

2.6    
5.1    
7.7    
10.3    
12.8    
15.4    
17.9    
20.5    
23.1    
25.6    
28.2    
30.8    
33.3    
35.9    
38.5    
41.0    
43.6    
46.2    
48.7    
51.3    
53.8    
56.4    
59.0    
61.5    
64.1    
66.7    
69.2    
71.8    
74.4    
76.9    
79.5    
82.1    
84.6    
87.2    
89.7    
92.3    
94.9    
97.4    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support